Planaria EST Database

DrC_00422

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00422
         (1391 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41383|TBA2_PATVU  Tubulin alpha-2/alpha-4 chain               760   0.0  
sp|P18258|TBA1_PARLI  Tubulin alpha-1 chain                       759   0.0  
sp|Q91060|TBA_NOTVI  Tubulin alpha chain                          759   0.0  
sp|P06603|TBA1_DROME  Tubulin alpha-1 chain                       758   0.0  
sp|P68369|TBA1_MOUSE  Tubulin alpha-1 chain (Alpha-tubulin 1...   757   0.0  
sp|Q8T6A5|TBA1_APLCA  Tubulin alpha-1 chain                       757   0.0  
sp|P05214|TBA3_MOUSE  Tubulin alpha-3/alpha-7 chain (Alpha-t...   756   0.0  
sp|P68361|TBA1_CRIGR  Tubulin alpha-1 chain (Alpha-tubulin 1...   755   0.0  
sp|P06605|TBA3_DROME  Tubulin alpha-3 chain                       754   0.0  
sp|P52273|TBA_BOMMO  Tubulin alpha chain                          754   0.0  

>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
          Length = 452

 Score =  760 bits (1963), Expect = 0.0
 Identities = 364/433 (84%), Positives = 392/433 (90%)
 Frame = +3

Query: 3    ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
            IS+HIGQAGVQMGNACWELYCLEHGIQ DGQMPS+K   G +D FNTFFSETG GK+VPR
Sbjct: 5    ISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64

Query: 183  ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
            A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYTVGKE+ID VLDRIRK
Sbjct: 65   AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRK 124

Query: 363  VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
            +AD CTGLQGFL+FH            LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEP
Sbjct: 125  LADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEP 184

Query: 543  YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
            YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185  YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244

Query: 723  DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 902
            DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL+VAEITN+CFE  NQMVK
Sbjct: 245  DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVK 304

Query: 903  CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 1082
            CDPR+GKYMSCC+LYRGDVVPKDV             QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305  CDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364

Query: 1083 GGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEARED 1262
            GGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED
Sbjct: 365  GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 424

Query: 1263 LAALEKDYEEVGM 1301
            LAALEKDYEEVG+
Sbjct: 425  LAALEKDYEEVGV 437

>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
          Length = 452

 Score =  759 bits (1961), Expect = 0.0
 Identities = 365/433 (84%), Positives = 392/433 (90%)
 Frame = +3

Query: 3    ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
            ISIH+GQAGVQMGNACWELYCLEHGIQ DGQMPS+K   G +D FNTFFSETG GK+VPR
Sbjct: 5    ISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64

Query: 183  ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
            A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYTVGKELID VLDRIRK
Sbjct: 65   AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDIVLDRIRK 124

Query: 363  VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
            +AD CTGLQGFL+FH            LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEP
Sbjct: 125  LADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEP 184

Query: 543  YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
            YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185  YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244

Query: 723  DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 902
            DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL+V+EITN+CFE  NQMVK
Sbjct: 245  DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVK 304

Query: 903  CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 1082
            CDPR+GKYM+CCLLYRGDVVPKDV             QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305  CDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364

Query: 1083 GGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEARED 1262
            GGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED
Sbjct: 365  GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 424

Query: 1263 LAALEKDYEEVGM 1301
            LAALEKDYEEVG+
Sbjct: 425  LAALEKDYEEVGV 437

>sp|Q91060|TBA_NOTVI Tubulin alpha chain
          Length = 450

 Score =  759 bits (1959), Expect = 0.0
 Identities = 361/433 (83%), Positives = 391/433 (90%)
 Frame = +3

Query: 3    ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
            IS+H+GQAGVQMGNACWELYCLEHGIQ DGQMPS+K   G +D FNTFFSETG GK+VPR
Sbjct: 5    ISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64

Query: 183  ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
            A+FVDLEPSVIDEVR G YRQLFHPEQLISGKEDAANNYARGHYT+GKE+IDQVLDR+RK
Sbjct: 65   AIFVDLEPSVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDQVLDRMRK 124

Query: 363  VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
            +AD CTGLQGFL+FH            LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEP
Sbjct: 125  LADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 184

Query: 543  YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
            YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERP+YT+LNRLI QIVSSITASLRF
Sbjct: 185  YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLISQIVSSITASLRF 244

Query: 723  DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 902
            DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE  NQMVK
Sbjct: 245  DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 304

Query: 903  CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 1082
            CDPR+GKYM+CCLLYRGDVVPKDV             QFVDWCPTGFKVGINYQPPT +P
Sbjct: 305  CDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTAVP 364

Query: 1083 GGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEARED 1262
            GGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED
Sbjct: 365  GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 424

Query: 1263 LAALEKDYEEVGM 1301
            +AALEKDYEEVG+
Sbjct: 425  MAALEKDYEEVGL 437

>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
          Length = 450

 Score =  758 bits (1957), Expect = 0.0
 Identities = 360/433 (83%), Positives = 391/433 (90%)
 Frame = +3

Query: 3    ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
            ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K   G +D FNTFFSETG GK+VPR
Sbjct: 5    ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPR 64

Query: 183  ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
            A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDRIRK
Sbjct: 65   AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 124

Query: 363  VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
            +AD CTGLQGFL+FH            LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEP
Sbjct: 125  LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 184

Query: 543  YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
            YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185  YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244

Query: 723  DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 902
            DGALNVDL EFQTNLVPYPRIHFPL TYAP+I A++A+HEQLSVAEITN+CFE  NQMVK
Sbjct: 245  DGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 304

Query: 903  CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 1082
            CDPR+GKYM+CC+LYRGDVVPKDV             QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305  CDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364

Query: 1083 GGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEARED 1262
            GGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED
Sbjct: 365  GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 424

Query: 1263 LAALEKDYEEVGM 1301
            LAALEKDYEEVGM
Sbjct: 425  LAALEKDYEEVGM 437

>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
            M-alpha-1)
 sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
 sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
 sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
          Length = 451

 Score =  757 bits (1955), Expect = 0.0
 Identities = 361/433 (83%), Positives = 392/433 (90%)
 Frame = +3

Query: 3    ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
            ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K   G +D FNTFFSETG GK+VPR
Sbjct: 5    ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64

Query: 183  ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
            A+FVDLEP+VIDEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE+ID VLDRIRK
Sbjct: 65   AVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRK 124

Query: 363  VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
            +AD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEP
Sbjct: 125  LADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEP 184

Query: 543  YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
            YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185  YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244

Query: 723  DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 902
            DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE  NQMVK
Sbjct: 245  DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 304

Query: 903  CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 1082
            CDPR+GKYM+CCLLYRGDVVPKDV             QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305  CDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364

Query: 1083 GGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEARED 1262
            GGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED
Sbjct: 365  GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 424

Query: 1263 LAALEKDYEEVGM 1301
            +AALEKDYEEVG+
Sbjct: 425  MAALEKDYEEVGV 437

>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
          Length = 451

 Score =  757 bits (1955), Expect = 0.0
 Identities = 362/433 (83%), Positives = 393/433 (90%)
 Frame = +3

Query: 3    ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
            ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K   G +D FNTFFSETG GK+VPR
Sbjct: 5    ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64

Query: 183  ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
            A+FVDLEPSV+DEVR+G YRQLFHPEQLI+GKEDAANNYARGHYTVGKELID VLDRIRK
Sbjct: 65   AVFVDLEPSVVDEVRSGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRK 124

Query: 363  VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
            +AD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF+VYPAPQ++TAVVEP
Sbjct: 125  LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSVYPAPQVSTAVVEP 184

Query: 543  YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
            YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERP+YT+LNRLIGQIVSSITASLRF
Sbjct: 185  YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRF 244

Query: 723  DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 902
            DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE  NQ+VK
Sbjct: 245  DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVK 304

Query: 903  CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 1082
            CDPR+GKYM+CC+LYRGDVVPKDV             QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305  CDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364

Query: 1083 GGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEARED 1262
            GGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED
Sbjct: 365  GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 424

Query: 1263 LAALEKDYEEVGM 1301
            LAALEKDYEEVG+
Sbjct: 425  LAALEKDYEEVGV 437

>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
            isotype M-alpha-3/7)
 sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
 sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
          Length = 450

 Score =  756 bits (1953), Expect = 0.0
 Identities = 360/433 (83%), Positives = 392/433 (90%)
 Frame = +3

Query: 3    ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
            ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K   G +D FNTFFSETG GK+VPR
Sbjct: 5    ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64

Query: 183  ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
            A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDRIRK
Sbjct: 65   AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 124

Query: 363  VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
            +AD CTGLQGFL+FH            LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEP
Sbjct: 125  LADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 184

Query: 543  YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
            YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185  YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244

Query: 723  DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 902
            DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE  NQMVK
Sbjct: 245  DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 304

Query: 903  CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 1082
            CDPR+GKYM+CC+LYRGDVVPKDV             QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305  CDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364

Query: 1083 GGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEARED 1262
            GGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED
Sbjct: 365  GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 424

Query: 1263 LAALEKDYEEVGM 1301
            LAALEKDYEEVG+
Sbjct: 425  LAALEKDYEEVGV 437

>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
 sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
            K-alpha-1)
 sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
            M-alpha-2)
 sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
 sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
          Length = 451

 Score =  755 bits (1949), Expect = 0.0
 Identities = 360/433 (83%), Positives = 391/433 (90%)
 Frame = +3

Query: 3    ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
            ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K   G +D FNTFFSETG GK+VPR
Sbjct: 5    ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64

Query: 183  ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
            A+FVDLEP+VIDEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE+ID VLDRIRK
Sbjct: 65   AVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRK 124

Query: 363  VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
            +AD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEP
Sbjct: 125  LADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEP 184

Query: 543  YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
            YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLI QIVSSITASLRF
Sbjct: 185  YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRF 244

Query: 723  DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 902
            DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE  NQMVK
Sbjct: 245  DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 304

Query: 903  CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 1082
            CDPR+GKYM+CCLLYRGDVVPKDV             QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305  CDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVP 364

Query: 1083 GGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEARED 1262
            GGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED
Sbjct: 365  GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 424

Query: 1263 LAALEKDYEEVGM 1301
            +AALEKDYEEVG+
Sbjct: 425  MAALEKDYEEVGV 437

>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
          Length = 450

 Score =  754 bits (1948), Expect = 0.0
 Identities = 360/433 (83%), Positives = 390/433 (90%)
 Frame = +3

Query: 3    ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
            ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K   G +D FNTFFSETG GK+VPR
Sbjct: 5    ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPR 64

Query: 183  ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
            A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDRIRK
Sbjct: 65   AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 124

Query: 363  VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
            +AD CTGLQGFL+FH            LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEP
Sbjct: 125  LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEP 184

Query: 543  YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
            YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185  YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244

Query: 723  DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 902
            DGALNVDL EFQTNLVPYPRIHFPL TYAP+I A++A+HEQLSVAEITN+CFE  NQMVK
Sbjct: 245  DGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 304

Query: 903  CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 1082
             DPR+GKYM+CC+LYRGDVVPKDV             QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305  VDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364

Query: 1083 GGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEARED 1262
            GGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED
Sbjct: 365  GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 424

Query: 1263 LAALEKDYEEVGM 1301
            LAALEKDYEEVGM
Sbjct: 425  LAALEKDYEEVGM 437

>sp|P52273|TBA_BOMMO Tubulin alpha chain
          Length = 450

 Score =  754 bits (1948), Expect = 0.0
 Identities = 358/433 (82%), Positives = 390/433 (90%)
 Frame = +3

Query: 3    ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
            IS+H+GQAGVQ+GNACWELYCLEHGIQ DGQMP++K   G +D FNTFFSETG GK+VPR
Sbjct: 5    ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 64

Query: 183  ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
            ALFVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDRIRK
Sbjct: 65   ALFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 124

Query: 363  VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
            +AD CTGLQGFL+FH            LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEP
Sbjct: 125  LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 184

Query: 543  YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
            YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IE PTYT+LNRLIGQIVSSITASLRF
Sbjct: 185  YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEPPTYTNLNRLIGQIVSSITASLRF 244

Query: 723  DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 902
            DGALNVDL EFQTNLVPYPRIHFPL TYAP+I A++A+HEQLSVAEITN+CFE  NQMVK
Sbjct: 245  DGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 304

Query: 903  CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 1082
            CDPR+GKYM+CC+LYRGDVVPKDV             QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305  CDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364

Query: 1083 GGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEARED 1262
            GGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED
Sbjct: 365  GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 424

Query: 1263 LAALEKDYEEVGM 1301
            LAALEKDYEEVGM
Sbjct: 425  LAALEKDYEEVGM 437

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,691,255
Number of Sequences: 369166
Number of extensions: 3243478
Number of successful extensions: 9389
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8888
length of database: 68,354,980
effective HSP length: 114
effective length of database: 47,295,190
effective search space used: 16506021310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00422

  1. Dr_sW_009_B06
  2. Dr_sW_002_L24
  3. Dr_sW_023_M20
  4. Dr_sW_015_D20
  5. Dr_sW_011_D21
  6. Dr_sW_023_K04
  7. Dr_sW_005_A17
  8. Dr_sW_002_M16
  9. Dr_sW_025_K04
  10. Dr_sW_013_P24
  11. Dr_sW_008_H02
  12. Dr_sW_021_P11
  13. Dr_sW_001_O21
  14. Dr_sW_017_H08
  15. Dr_sW_004_N18
  16. Dr_sW_007_F04
  17. Dr_sW_017_N21
  18. Dr_sW_017_M22
  19. Dr_sW_020_K11
  20. Dr_sW_028_D23
  21. Dr_sW_017_G03
  22. Dr_sW_021_I10