Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_M16
(771 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 309 6e-84
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 308 1e-83
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 308 1e-83
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 307 2e-83
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?) 307 2e-83
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 307 2e-83
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 306 3e-83
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 306 4e-83
sp|Q91060|TBA_NOTVI Tubulin alpha chain 306 4e-83
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 306 4e-83
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 309 bits (791), Expect = 6e-84
Identities = 153/176 (86%), Positives = 160/176 (90%)
Frame = +1
Query: 1 SGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLL 180
+GKEDAANNYARGHYTVGKELID VLDRIRK+AD CTGLQGFL+FH LL
Sbjct: 94 TGKEDAANNYARGHYTVGKELIDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLL 153
Query: 181 MERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 360
MERLSVDYGKKSKLEFAVYPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC
Sbjct: 154 MERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 213
Query: 361 KKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPL 528
++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL
Sbjct: 214 RRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 86.7 bits (213), Expect = 7e-17
Identities = 38/55 (69%), Positives = 47/55 (85%), Gaps = 4/55 (7%)
Frame = +3
Query: 546 SYVPI----ELFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVP 698
+Y P+ + +HEQL+V+EITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVP
Sbjct: 271 TYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP 325
Score = 33.1 bits (74), Expect = 0.86
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +2
Query: 530 ATYAPIICADRAFP*AIKRSGNHKFMF*TQQSNGKM*SKKWKIHELLLVISWRCRSLKML 709
ATYAP+I A++A+ + S F K + K L+ K +
Sbjct: 270 ATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP-KDV 328
Query: 710 MLQLITLKTEKLFQFVDWCP 769
+ T+KT++ QFVDWCP
Sbjct: 329 NAAIATIKTKRTIQFVDWCP 348
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 308 bits (789), Expect = 1e-83
Identities = 151/176 (85%), Positives = 160/176 (90%)
Frame = +1
Query: 1 SGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLL 180
+GKEDAANNYARGHYTVGKE+ID VLDRIRK+AD CTGLQGFL+FH LL
Sbjct: 94 TGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLL 153
Query: 181 MERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 360
MERLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC
Sbjct: 154 MERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 213
Query: 361 KKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPL 528
++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL
Sbjct: 214 RRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 88.2 bits (217), Expect = 2e-17
Identities = 39/55 (70%), Positives = 47/55 (85%), Gaps = 4/55 (7%)
Frame = +3
Query: 546 SYVPI----ELFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVP 698
+Y P+ + +HEQL+VAEITN+CFE NQMVKCDPR+GKYMSCC+LYRGDVVP
Sbjct: 271 TYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVP 325
Score = 31.6 bits (70), Expect = 2.5
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +2
Query: 530 ATYAPIICADRAFP*AIKRSGNHKFMF*TQQSNGKM*SKKWKIHELLLVISWRCRSLKML 709
ATYAP+I A++A+ + + F K + K ++ K +
Sbjct: 270 ATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVP-KDV 328
Query: 710 MLQLITLKTEKLFQFVDWCP 769
+ T+KT++ QFVDWCP
Sbjct: 329 NAAIATIKTKRTIQFVDWCP 348
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 308 bits (789), Expect = 1e-83
Identities = 149/176 (84%), Positives = 160/176 (90%)
Frame = +1
Query: 1 SGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLL 180
+GKEDAANNYARGHYT+GKE++D VLDRIRK+ADNC GLQGFL+FH LL
Sbjct: 94 TGKEDAANNYARGHYTIGKEIVDIVLDRIRKLADNCAGLQGFLIFHSFGGGTGSGFTSLL 153
Query: 181 MERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 360
MERLSVDYGKKSKLEFA+YPAPQ+ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC
Sbjct: 154 MERLSVDYGKKSKLEFAIYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 213
Query: 361 KKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPL 528
++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL
Sbjct: 214 RRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 87.8 bits (216), Expect = 3e-17
Identities = 39/55 (70%), Positives = 47/55 (85%), Gaps = 4/55 (7%)
Frame = +3
Query: 546 SYVPI----ELFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVP 698
+Y P+ + +HEQLSV+EITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVP
Sbjct: 271 TYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP 325
Score = 31.6 bits (70), Expect = 2.5
Identities = 23/79 (29%), Positives = 35/79 (44%)
Frame = +2
Query: 533 TYAPIICADRAFP*AIKRSGNHKFMF*TQQSNGKM*SKKWKIHELLLVISWRCRSLKMLM 712
TYAP+I A++A+ + S F K + K L+ K +
Sbjct: 271 TYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP-KDVN 329
Query: 713 LQLITLKTEKLFQFVDWCP 769
+ T+KT++ QFVDWCP
Sbjct: 330 AAIATIKTKRSIQFVDWCP 348
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 307 bits (787), Expect = 2e-83
Identities = 149/176 (84%), Positives = 160/176 (90%)
Frame = +1
Query: 1 SGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLL 180
+GKEDAANNYARGHYT+GKE++D VLDRIRK+AD CTGLQGFL+FH LL
Sbjct: 94 TGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLL 153
Query: 181 MERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 360
MERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC
Sbjct: 154 MERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 213
Query: 361 KKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPL 528
++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL
Sbjct: 214 RRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 84.3 bits (207), Expect = 3e-16
Identities = 38/55 (69%), Positives = 46/55 (83%), Gaps = 4/55 (7%)
Frame = +3
Query: 546 SYVPI----ELFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVP 698
+Y P+ + +HEQLSVAEITN+CFE NQMVK DPR+GKYM+CC+LYRGDVVP
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVP 325
Score = 30.8 bits (68), Expect = 4.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 719 LITLKTEKLFQFVDWCP 769
+ T+KT++ QFVDWCP
Sbjct: 332 IATIKTKRTIQFVDWCP 348
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
Length = 450
Score = 307 bits (787), Expect = 2e-83
Identities = 149/176 (84%), Positives = 160/176 (90%)
Frame = +1
Query: 1 SGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLL 180
+GKEDAANNYARGHYT+GKE++D VLDRIRK+AD CTGLQGFL+FH LL
Sbjct: 94 TGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLL 153
Query: 181 MERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 360
MERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC
Sbjct: 154 MERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 213
Query: 361 KKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPL 528
++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL
Sbjct: 214 RRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 86.7 bits (213), Expect = 7e-17
Identities = 38/55 (69%), Positives = 47/55 (85%), Gaps = 4/55 (7%)
Frame = +3
Query: 546 SYVPI----ELFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVP 698
+Y P+ + +HEQL+V+EITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVP
Sbjct: 271 TYAPVISSEKAYHEQLTVSEITNTCFEPANQMVKCDPRHGKYMACCLLYRGDVVP 325
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 307 bits (786), Expect = 2e-83
Identities = 148/176 (84%), Positives = 160/176 (90%)
Frame = +1
Query: 1 SGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLL 180
+GKEDAANNYARGHYT+GKE++D VLDRIRK+AD CTGLQGFL+FH LL
Sbjct: 94 TGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLL 153
Query: 181 MERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 360
MERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC
Sbjct: 154 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 213
Query: 361 KKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPL 528
++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL
Sbjct: 214 RRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 88.2 bits (217), Expect = 2e-17
Identities = 39/55 (70%), Positives = 47/55 (85%), Gaps = 4/55 (7%)
Frame = +3
Query: 546 SYVPI----ELFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVP 698
+Y P+ + +HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CC+LYRGDVVP
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 325
Score = 30.8 bits (68), Expect = 4.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 719 LITLKTEKLFQFVDWCP 769
+ T+KT++ QFVDWCP
Sbjct: 332 IATIKTKRTIQFVDWCP 348
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 306 bits (785), Expect = 3e-83
Identities = 149/176 (84%), Positives = 160/176 (90%)
Frame = +1
Query: 1 SGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLL 180
+GKEDAANNYARGHYT+GKE++D VLDRIRK+AD CTGLQGFL+FH LL
Sbjct: 94 TGKEDAANNYARGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLL 153
Query: 181 MERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 360
MERLSVDYGKKSKLEFAVYPAPQ+ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC
Sbjct: 154 MERLSVDYGKKSKLEFAVYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 213
Query: 361 KKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPL 528
++NL IERP+YT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL
Sbjct: 214 RRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 89.0 bits (219), Expect = 1e-17
Identities = 40/55 (72%), Positives = 47/55 (85%), Gaps = 4/55 (7%)
Frame = +3
Query: 546 SYVPI----ELFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVP 698
+Y P+ + +HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVP
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP 325
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 306 bits (784), Expect = 4e-83
Identities = 148/176 (84%), Positives = 160/176 (90%)
Frame = +1
Query: 1 SGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLL 180
+GKEDAANNYARGHYT+GKE+ID VLDRIRK+AD CTGLQGFL+FH LL
Sbjct: 94 TGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLL 153
Query: 181 MERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 360
MERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC
Sbjct: 154 MERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 213
Query: 361 KKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPL 528
++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL
Sbjct: 214 RRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 89.0 bits (219), Expect = 1e-17
Identities = 40/55 (72%), Positives = 47/55 (85%), Gaps = 4/55 (7%)
Frame = +3
Query: 546 SYVPI----ELFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVP 698
+Y P+ + +HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVP
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP 325
Score = 32.3 bits (72), Expect = 1.5
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = +2
Query: 530 ATYAPIICADRAFP*AIKRSGNHKFMF*TQQSNGKM*SKKWKIHELLLVISWRCRSLKML 709
ATYAP+I A++A+ + + F K + K L+ K +
Sbjct: 270 ATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP-KDV 328
Query: 710 MLQLITLKTEKLFQFVDWCP 769
+ T+KT++ QFVDWCP
Sbjct: 329 NAAIATIKTKRTIQFVDWCP 348
>sp|Q91060|TBA_NOTVI Tubulin alpha chain
Length = 450
Score = 306 bits (784), Expect = 4e-83
Identities = 148/176 (84%), Positives = 160/176 (90%)
Frame = +1
Query: 1 SGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLL 180
SGKEDAANNYARGHYT+GKE+IDQVLDR+RK+AD CTGLQGFL+FH LL
Sbjct: 94 SGKEDAANNYARGHYTIGKEIIDQVLDRMRKLADQCTGLQGFLVFHSFGGGTGSGFTSLL 153
Query: 181 MERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 360
MERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC
Sbjct: 154 MERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 213
Query: 361 KKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPL 528
++NL IERP+YT+LNRLI QIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL
Sbjct: 214 RRNLDIERPSYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 89.0 bits (219), Expect = 1e-17
Identities = 40/55 (72%), Positives = 47/55 (85%), Gaps = 4/55 (7%)
Frame = +3
Query: 546 SYVPI----ELFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVP 698
+Y P+ + +HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVP
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP 325
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 306 bits (784), Expect = 4e-83
Identities = 150/176 (85%), Positives = 160/176 (90%)
Frame = +1
Query: 1 SGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLL 180
+GKEDAANNYARGHYTVGKELID VLDRIRK+AD CTGLQGFL+FH LL
Sbjct: 94 TGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLL 153
Query: 181 MERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 360
MERLSVDYGKKSKLEF+VYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC
Sbjct: 154 MERLSVDYGKKSKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 213
Query: 361 KKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPL 528
++NL IERP+YT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL
Sbjct: 214 RRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL 269
Score = 87.0 bits (214), Expect = 5e-17
Identities = 38/55 (69%), Positives = 47/55 (85%), Gaps = 4/55 (7%)
Frame = +3
Query: 546 SYVPI----ELFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVP 698
+Y P+ + +HEQLSVAEITN+CFE NQ+VKCDPR+GKYM+CC+LYRGDVVP
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVP 325
Score = 31.2 bits (69), Expect = 3.3
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +2
Query: 530 ATYAPIICADRAFP*AIKRSGNHKFMF*TQQSNGKM*SKKWKIHELLLVISWRCRSLKML 709
ATYAP+I A++A+ + + F K + K ++ K +
Sbjct: 270 ATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVP-KDV 328
Query: 710 MLQLITLKTEKLFQFVDWCP 769
+ T+KT++ QFVDWCP
Sbjct: 329 NAAIATIKTKRTIQFVDWCP 348
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,618,279
Number of Sequences: 369166
Number of extensions: 1865218
Number of successful extensions: 5255
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5203
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)