Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_I10
(759 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 402 e-112
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 402 e-112
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 402 e-112
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 402 e-112
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 402 e-112
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 400 e-111
sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 399 e-111
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 399 e-111
sp|P52273|TBA_BOMMO Tubulin alpha chain 399 e-111
sp|P09645|TBA8_CHICK Tubulin alpha-8 chain 399 e-111
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 402 bits (1032), Expect = e-112
Identities = 191/223 (85%), Positives = 205/223 (91%)
Frame = +1
Query: 1 KNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAP 180
+NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP
Sbjct: 215 RNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAP 274
Query: 181 IICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXX 360
+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV
Sbjct: 275 VISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAT 334
Query: 361 XXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHK 540
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 541 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 669
FDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 402 bits (1032), Expect = e-112
Identities = 191/223 (85%), Positives = 205/223 (91%)
Frame = +1
Query: 1 KNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAP 180
+NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP
Sbjct: 215 RNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAP 274
Query: 181 IICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXX 360
+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV
Sbjct: 275 VISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAT 334
Query: 361 XXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHK 540
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 541 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 669
FDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGV 437
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 402 bits (1032), Expect = e-112
Identities = 191/223 (85%), Positives = 204/223 (91%)
Frame = +1
Query: 1 KNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAP 180
+NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAP
Sbjct: 215 RNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAP 274
Query: 181 IICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXX 360
+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV
Sbjct: 275 VISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAT 334
Query: 361 XXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHK 540
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 541 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 669
FDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 437
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 402 bits (1032), Expect = e-112
Identities = 191/223 (85%), Positives = 205/223 (91%)
Frame = +1
Query: 1 KNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAP 180
+NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP
Sbjct: 215 RNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAP 274
Query: 181 IICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXX 360
+I A++A+HEQL+VAEITN+CFE NQMVKCDPR+GKYMSCC+LYRGDVVPKDV
Sbjct: 275 VISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIAT 334
Query: 361 XXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHK 540
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 541 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 669
FDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 402 bits (1032), Expect = e-112
Identities = 191/223 (85%), Positives = 205/223 (91%)
Frame = +1
Query: 1 KNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAP 180
+NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP
Sbjct: 176 RNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAP 235
Query: 181 IICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXX 360
+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV
Sbjct: 236 VISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAT 295
Query: 361 XXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHK 540
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 296 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 355
Query: 541 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 669
FDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+
Sbjct: 356 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGV 398
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 400 bits (1028), Expect = e-111
Identities = 190/223 (85%), Positives = 205/223 (91%)
Frame = +1
Query: 1 KNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAP 180
+NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP
Sbjct: 215 RNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAP 274
Query: 181 IICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXX 360
+I A++A+HEQL+V+EITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV
Sbjct: 275 VISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAT 334
Query: 361 XXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHK 540
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 541 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 669
FDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
M-alpha-4)
sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin)
sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin) (Tubulin H2-alpha)
Length = 448
Score = 399 bits (1026), Expect = e-111
Identities = 190/223 (85%), Positives = 204/223 (91%)
Frame = +1
Query: 1 KNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAP 180
+NL IERPTYT+LNRLI QIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP
Sbjct: 215 RNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAP 274
Query: 181 IICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXX 360
+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV
Sbjct: 275 VISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAA 334
Query: 361 XXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHK 540
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 541 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 669
FDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGI 437
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 399 bits (1026), Expect = e-111
Identities = 190/223 (85%), Positives = 204/223 (91%)
Frame = +1
Query: 1 KNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAP 180
+NL IERPTYT+LNRLI QIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP
Sbjct: 215 RNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAP 274
Query: 181 IICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXX 360
+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV
Sbjct: 275 VISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAT 334
Query: 361 XXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHK 540
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 541 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 669
FDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGV 437
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 399 bits (1025), Expect = e-111
Identities = 190/223 (85%), Positives = 203/223 (91%)
Frame = +1
Query: 1 KNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAP 180
+NL IE PTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAP
Sbjct: 215 RNLDIEPPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAP 274
Query: 181 IICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXX 360
+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV
Sbjct: 275 VISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAT 334
Query: 361 XXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHK 540
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 541 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 669
FDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 437
>sp|P09645|TBA8_CHICK Tubulin alpha-8 chain
Length = 324
Score = 399 bits (1025), Expect = e-111
Identities = 189/222 (85%), Positives = 204/222 (91%)
Frame = +1
Query: 1 KNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAP 180
+NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TY+P
Sbjct: 90 RNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYSP 149
Query: 181 IICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXX 360
II A++A+HEQLSV+EITN+CFE +NQMVKCDPR+GKYM+CC+LYRGDVVPKDV
Sbjct: 150 IISAEKAYHEQLSVSEITNACFEPSNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAA 209
Query: 361 XXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHK 540
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 210 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 269
Query: 541 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 666
FDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG
Sbjct: 270 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 311
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,060,897
Number of Sequences: 369166
Number of extensions: 1517560
Number of successful extensions: 4219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3975
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)