Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_P24
(785 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 429 e-120
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 428 e-120
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 427 e-119
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 427 e-119
sp|P30436|TBA_ONCKE Tubulin alpha chain 427 e-119
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 427 e-119
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 426 e-119
sp|Q5R1W4|TBAK_PANTR Tubulin alpha-ubiquitous chain (Alpha-... 426 e-119
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 425 e-119
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 424 e-118
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 429 bits (1102), Expect = e-120
Identities = 205/253 (81%), Positives = 222/253 (87%)
Frame = +3
Query: 3 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 182
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEP 184
Query: 183 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 362
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244
Query: 363 DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 542
DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL+VAEITN+CFE NQMVK
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVK 304
Query: 543 CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 722
CDPR+GKYMSCC+LYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305 CDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364
Query: 723 GGDMAKVQRAVCM 761
GGD+AKVQRAVCM
Sbjct: 365 GGDLAKVQRAVCM 377
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 428 bits (1100), Expect = e-120
Identities = 204/253 (80%), Positives = 222/253 (87%)
Frame = +3
Query: 3 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 182
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEP 184
Query: 183 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 362
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244
Query: 363 DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 542
DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVK
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 304
Query: 543 CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 722
CDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305 CDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364
Query: 723 GGDMAKVQRAVCM 761
GGD+AKVQRAVCM
Sbjct: 365 GGDLAKVQRAVCM 377
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 427 bits (1099), Expect = e-119
Identities = 205/253 (81%), Positives = 222/253 (87%)
Frame = +3
Query: 3 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 182
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEP 184
Query: 183 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 362
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244
Query: 363 DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 542
DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL+V+EITN+CFE NQMVK
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVK 304
Query: 543 CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 722
CDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305 CDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364
Query: 723 GGDMAKVQRAVCM 761
GGD+AKVQRAVCM
Sbjct: 365 GGDLAKVQRAVCM 377
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 427 bits (1098), Expect = e-119
Identities = 204/253 (80%), Positives = 222/253 (87%)
Frame = +3
Query: 3 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 182
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEP
Sbjct: 125 LADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 184
Query: 183 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 362
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244
Query: 363 DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 542
DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVK
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 304
Query: 543 CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 722
CDPR+GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305 CDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364
Query: 723 GGDMAKVQRAVCM 761
GGD+AKVQRAVCM
Sbjct: 365 GGDLAKVQRAVCM 377
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 427 bits (1097), Expect = e-119
Identities = 204/253 (80%), Positives = 222/253 (87%)
Frame = +3
Query: 3 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 182
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEP
Sbjct: 119 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEP 178
Query: 183 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 362
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERP+YT+LNRLIGQIVSSITASLRF
Sbjct: 179 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRF 238
Query: 363 DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 542
DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVA+ITN+CFE NQMVK
Sbjct: 239 DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVADITNACFEPANQMVK 298
Query: 543 CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 722
CDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 299 CDPRHGKYMACCLLYRGDVVPKDVNSAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVP 358
Query: 723 GGDMAKVQRAVCM 761
GGD+AKVQRAVCM
Sbjct: 359 GGDLAKVQRAVCM 371
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 427 bits (1097), Expect = e-119
Identities = 203/253 (80%), Positives = 221/253 (87%)
Frame = +3
Query: 3 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 182
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 184
Query: 183 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 362
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244
Query: 363 DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 542
DGALNVDL EFQTNLVPYPRIHFPL TYAP+I A++A+HEQLSVAEITN+CFE NQMVK
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 304
Query: 543 CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 722
CDPR+GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305 CDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364
Query: 723 GGDMAKVQRAVCM 761
GGD+AKVQRAVCM
Sbjct: 365 GGDLAKVQRAVCM 377
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 426 bits (1094), Expect = e-119
Identities = 203/253 (80%), Positives = 221/253 (87%)
Frame = +3
Query: 3 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 182
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEP 184
Query: 183 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 362
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLI QIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRF 244
Query: 363 DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 542
DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVK
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 304
Query: 543 CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 722
CDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305 CDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVP 364
Query: 723 GGDMAKVQRAVCM 761
GGD+AKVQRAVCM
Sbjct: 365 GGDLAKVQRAVCM 377
>sp|Q5R1W4|TBAK_PANTR Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
Length = 451
Score = 426 bits (1094), Expect = e-119
Identities = 203/253 (80%), Positives = 221/253 (87%)
Frame = +3
Query: 3 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 182
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEP 184
Query: 183 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 362
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLI QIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRF 244
Query: 363 DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 542
DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVK
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 304
Query: 543 CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 722
CDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305 CDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVP 364
Query: 723 GGDMAKVQRAVCM 761
GGD+AKVQRAVCM
Sbjct: 365 GGDLAKVQRAVCM 377
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 425 bits (1092), Expect = e-119
Identities = 202/253 (79%), Positives = 222/253 (87%)
Frame = +3
Query: 3 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 182
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+VYPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSVYPAPQVSTAVVEP 184
Query: 183 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 362
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERP+YT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRF 244
Query: 363 DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 542
DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQ+VK
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVK 304
Query: 543 CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 722
CDPR+GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305 CDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 364
Query: 723 GGDMAKVQRAVCM 761
GGD+AKVQRAVCM
Sbjct: 365 GGDLAKVQRAVCM 377
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 424 bits (1091), Expect = e-118
Identities = 202/253 (79%), Positives = 221/253 (87%)
Frame = +3
Query: 3 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 182
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEP 184
Query: 183 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 362
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLI QIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRF 244
Query: 363 DGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVK 542
DGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSV+EITN+CFE NQMVK
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVK 304
Query: 543 CDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIP 722
CDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+P
Sbjct: 305 CDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVP 364
Query: 723 GGDMAKVQRAVCM 761
GGD+AKVQRAVCM
Sbjct: 365 GGDLAKVQRAVCM 377
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,685,704
Number of Sequences: 369166
Number of extensions: 1841479
Number of successful extensions: 4709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4613
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)