Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_B06
(388 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91060|TBA_NOTVI Tubulin alpha chain 238 4e-63
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 234 3e-62
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 234 5e-62
sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain (Alpha-4 tubulin) 234 5e-62
sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain (Alpha-2 tubulin) 234 5e-62
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 234 6e-62
sp|P46259|TBA1_PEA Tubulin alpha-1 chain 233 1e-61
sp|P29510|TBA2_ARATH Tubulin alpha-2/alpha-4 chain 233 1e-61
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 232 2e-61
sp|P08537|TBA_XENLA Tubulin alpha chain 232 2e-61
>sp|Q91060|TBA_NOTVI Tubulin alpha chain
Length = 450
Score = 238 bits (606), Expect = 4e-63
Identities = 109/129 (84%), Positives = 119/129 (92%)
Frame = +1
Query: 1 IHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRAL 180
+H+GQAGVQMGNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+
Sbjct: 7 VHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAI 66
Query: 181 FVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVA 360
FVDLEPSVIDEVR G YRQLFHPEQLISGKEDAANNYARGHYT+GKE+IDQVLDR+RK+A
Sbjct: 67 FVDLEPSVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDQVLDRMRKLA 126
Query: 361 DNCTGLQGF 387
D CTGLQGF
Sbjct: 127 DQCTGLQGF 135
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 234 bits (598), Expect = 3e-62
Identities = 109/129 (84%), Positives = 119/129 (92%)
Frame = +1
Query: 1 IHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRAL 180
IH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+
Sbjct: 7 IHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAV 66
Query: 181 FVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVA 360
FVDLEPSV+DEVR+G YRQLFHPEQLI+GKEDAANNYARGHYTVGKELID VLDRIRK+A
Sbjct: 67 FVDLEPSVVDEVRSGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLA 126
Query: 361 DNCTGLQGF 387
D CTGLQGF
Sbjct: 127 DQCTGLQGF 135
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 234 bits (597), Expect = 5e-62
Identities = 109/129 (84%), Positives = 118/129 (91%)
Frame = +1
Query: 1 IHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRAL 180
IH+GQAGVQMGNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+
Sbjct: 7 IHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAV 66
Query: 181 FVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVA 360
FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYTVGKELID VLDRIRK+A
Sbjct: 67 FVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDIVLDRIRKLA 126
Query: 361 DNCTGLQGF 387
D CTGLQGF
Sbjct: 127 DQCTGLQGF 135
>sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain (Alpha-4 tubulin)
Length = 450
Score = 234 bits (597), Expect = 5e-62
Identities = 107/129 (82%), Positives = 119/129 (92%)
Frame = +1
Query: 1 IHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRAL 180
IHIGQAG+Q+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+
Sbjct: 7 IHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAV 66
Query: 181 FVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVA 360
FVDLEP+VIDEVR GAYRQLFHPEQLISGKEDAANN+ARGHYT+GKE++D LDRIRK+A
Sbjct: 67 FVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLA 126
Query: 361 DNCTGLQGF 387
DNCTGLQGF
Sbjct: 127 DNCTGLQGF 135
>sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain (Alpha-2 tubulin)
Length = 450
Score = 234 bits (597), Expect = 5e-62
Identities = 107/129 (82%), Positives = 119/129 (92%)
Frame = +1
Query: 1 IHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRAL 180
IHIGQAG+Q+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+
Sbjct: 7 IHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAV 66
Query: 181 FVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVA 360
FVDLEP+VIDEVR GAYRQLFHPEQLISGKEDAANN+ARGHYT+GKE++D LDRIRK+A
Sbjct: 67 FVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLA 126
Query: 361 DNCTGLQGF 387
DNCTGLQGF
Sbjct: 127 DNCTGLQGF 135
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 234 bits (596), Expect = 6e-62
Identities = 108/129 (83%), Positives = 118/129 (91%)
Frame = +1
Query: 1 IHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRAL 180
+HIGQAGVQMGNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+
Sbjct: 7 VHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAV 66
Query: 181 FVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVA 360
FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYTVGKE+ID VLDRIRK+A
Sbjct: 67 FVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLA 126
Query: 361 DNCTGLQGF 387
D CTGLQGF
Sbjct: 127 DQCTGLQGF 135
>sp|P46259|TBA1_PEA Tubulin alpha-1 chain
Length = 452
Score = 233 bits (593), Expect = 1e-61
Identities = 106/129 (82%), Positives = 118/129 (91%)
Frame = +1
Query: 1 IHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRAL 180
IHIGQAG+Q+GNACWELYCLEHGIQ DGQMP +K G +D FNTFFSETG GK+VPRA+
Sbjct: 7 IHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAV 66
Query: 181 FVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVA 360
FVDLEP+VIDEVR GAYRQLFHPEQLISGKEDAANN+ARGHYT+GKE++D LDRIRK+A
Sbjct: 67 FVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLA 126
Query: 361 DNCTGLQGF 387
DNCTGLQGF
Sbjct: 127 DNCTGLQGF 135
>sp|P29510|TBA2_ARATH Tubulin alpha-2/alpha-4 chain
Length = 450
Score = 233 bits (593), Expect = 1e-61
Identities = 106/129 (82%), Positives = 118/129 (91%)
Frame = +1
Query: 1 IHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRAL 180
IHIGQAG+Q+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+
Sbjct: 7 IHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAV 66
Query: 181 FVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVA 360
FVDLEP+VIDEVR G YRQLFHPEQLISGKEDAANN+ARGHYT+GKE++D LDRIRK+A
Sbjct: 67 FVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLA 126
Query: 361 DNCTGLQGF 387
DNCTGLQGF
Sbjct: 127 DNCTGLQGF 135
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 232 bits (592), Expect = 2e-61
Identities = 107/129 (82%), Positives = 118/129 (91%)
Frame = +1
Query: 1 IHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRAL 180
IH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+
Sbjct: 7 IHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAV 66
Query: 181 FVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVA 360
FVDLEP+VIDEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE+ID VLDRIRK+A
Sbjct: 67 FVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLA 126
Query: 361 DNCTGLQGF 387
D CTGLQGF
Sbjct: 127 DQCTGLQGF 135
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 232 bits (592), Expect = 2e-61
Identities = 107/129 (82%), Positives = 118/129 (91%)
Frame = +1
Query: 1 IHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRAL 180
IH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+
Sbjct: 7 IHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAV 66
Query: 181 FVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVA 360
FVDLEP+VIDEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE+ID VLDRIRK+A
Sbjct: 67 FVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLA 126
Query: 361 DNCTGLQGF 387
D CTGLQGF
Sbjct: 127 DQCTGLQGF 135
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,858,887
Number of Sequences: 369166
Number of extensions: 893776
Number of successful extensions: 3302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3069
length of database: 68,354,980
effective HSP length: 95
effective length of database: 50,805,155
effective search space used: 1676570115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)