Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_K04
(796 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 463 e-130
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 462 e-130
sp|Q91060|TBA_NOTVI Tubulin alpha chain 462 e-130
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 460 e-129
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 460 e-129
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 460 e-129
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 459 e-129
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 459 e-129
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 458 e-129
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 458 e-129
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 463 bits (1191), Expect = e-130
Identities = 225/264 (85%), Positives = 239/264 (90%)
Frame = +3
Query: 3 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
ISIH+GQAGVQMGNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 183 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYTVGKELID VLDRIRK
Sbjct: 65 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDIVLDRIRK 124
Query: 363 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEP 184
Query: 543 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244
Query: 723 DGALNVDLNEFQTNLVPYPRIHFP 794
DGALNVDL EFQTNLVPYPRIHFP
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFP 268
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 462 bits (1189), Expect = e-130
Identities = 223/264 (84%), Positives = 239/264 (90%)
Frame = +3
Query: 3 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
IS+HIGQAGVQMGNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 183 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYTVGKE+ID VLDRIRK
Sbjct: 65 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRK 124
Query: 363 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEP 184
Query: 543 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244
Query: 723 DGALNVDLNEFQTNLVPYPRIHFP 794
DGALNVDL EFQTNLVPYPRIHFP
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFP 268
>sp|Q91060|TBA_NOTVI Tubulin alpha chain
Length = 450
Score = 462 bits (1188), Expect = e-130
Identities = 221/264 (83%), Positives = 239/264 (90%)
Frame = +3
Query: 3 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
IS+H+GQAGVQMGNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 183 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
A+FVDLEPSVIDEVR G YRQLFHPEQLISGKEDAANNYARGHYT+GKE+IDQVLDR+RK
Sbjct: 65 AIFVDLEPSVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDQVLDRMRK 124
Query: 363 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 184
Query: 543 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERP+YT+LNRLI QIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLISQIVSSITASLRF 244
Query: 723 DGALNVDLNEFQTNLVPYPRIHFP 794
DGALNVDL EFQTNLVPYPRIHFP
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFP 268
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 460 bits (1184), Expect = e-129
Identities = 220/264 (83%), Positives = 239/264 (90%)
Frame = +3
Query: 3 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPR 64
Query: 183 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDRIRK
Sbjct: 65 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 124
Query: 363 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEP 184
Query: 543 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244
Query: 723 DGALNVDLNEFQTNLVPYPRIHFP 794
DGALNVDL EFQTNLVPYPRIHFP
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFP 268
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 460 bits (1184), Expect = e-129
Identities = 222/264 (84%), Positives = 240/264 (90%)
Frame = +3
Query: 3 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 183 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
A+FVDLEPSV+DEVR+G YRQLFHPEQLI+GKEDAANNYARGHYTVGKELID VLDRIRK
Sbjct: 65 AVFVDLEPSVVDEVRSGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRK 124
Query: 363 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+VYPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSVYPAPQVSTAVVEP 184
Query: 543 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERP+YT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRF 244
Query: 723 DGALNVDLNEFQTNLVPYPRIHFP 794
DGALNVDL EFQTNLVPYPRIHFP
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFP 268
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 460 bits (1183), Expect = e-129
Identities = 219/264 (82%), Positives = 239/264 (90%)
Frame = +3
Query: 3 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPR 64
Query: 183 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDRIRK
Sbjct: 65 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 124
Query: 363 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 184
Query: 543 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244
Query: 723 DGALNVDLNEFQTNLVPYPRIHFP 794
DGALNVDL EFQTNLVPYPRIHFP
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFP 268
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 459 bits (1181), Expect = e-129
Identities = 220/264 (83%), Positives = 239/264 (90%)
Frame = +3
Query: 3 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 183 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
A+FVDLEP+VIDEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE+ID VLDRIRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRK 124
Query: 363 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEP 184
Query: 543 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244
Query: 723 DGALNVDLNEFQTNLVPYPRIHFP 794
DGALNVDL EFQTNLVPYPRIHFP
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFP 268
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 459 bits (1180), Expect = e-129
Identities = 219/264 (82%), Positives = 237/264 (89%)
Frame = +3
Query: 3 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
ISIH+GQAG QMGNACWELYCLEHGIQ DGQMPS+K G +D FNTFF ETG GK+VPR
Sbjct: 5 ISIHVGQAGAQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFCETGAGKHVPR 64
Query: 183 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
A+FVDLEP+VIDE+R G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDRIRK
Sbjct: 65 AVFVDLEPTVIDEIRTGVYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDIVLDRIRK 124
Query: 363 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
+ADNC GLQGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQ+ATAVVEP
Sbjct: 125 LADNCAGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVATAVVEP 184
Query: 543 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244
Query: 723 DGALNVDLNEFQTNLVPYPRIHFP 794
DGALNVDL EFQTNLVPYPRIHFP
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFP 268
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 458 bits (1179), Expect = e-129
Identities = 219/264 (82%), Positives = 239/264 (90%)
Frame = +3
Query: 3 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 183 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDRIRK
Sbjct: 65 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 124
Query: 363 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEP
Sbjct: 125 LADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 184
Query: 543 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244
Query: 723 DGALNVDLNEFQTNLVPYPRIHFP 794
DGALNVDL EFQTNLVPYPRIHFP
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFP 268
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 458 bits (1178), Expect = e-129
Identities = 217/264 (82%), Positives = 239/264 (90%)
Frame = +3
Query: 3 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 182
ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 183 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 362
A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDR+RK
Sbjct: 65 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRK 124
Query: 363 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 542
++D CTGLQGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEP
Sbjct: 125 LSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 184
Query: 543 YNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRF 722
YNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRF
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRF 244
Query: 723 DGALNVDLNEFQTNLVPYPRIHFP 794
DGALNVDL EFQTNLVPYPRIHFP
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFP 268
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,695,416
Number of Sequences: 369166
Number of extensions: 1933472
Number of successful extensions: 6024
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5765
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)