Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_A17
(908 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 460 e-129
sp|Q91060|TBA_NOTVI Tubulin alpha chain 459 e-129
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 459 e-129
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 458 e-129
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 458 e-129
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 457 e-128
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 457 e-128
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 456 e-128
sp|P02550|TBA_PIG Tubulin alpha chain 456 e-128
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 456 e-128
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 460 bits (1183), Expect = e-129
Identities = 234/311 (75%), Positives = 257/311 (82%), Gaps = 9/311 (2%)
Frame = +3
Query: 3 CWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRALFVDLEPSVIDEVR 182
CWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+FVDLEP+V+DEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 79
Query: 183 NGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFH 362
G YRQLFHPEQLI+GKEDAANNYARGHYTVGKELID VLDRIRK+AD CTGLQGFL+FH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDIVLDRIRKLADQCTGLQGFLIFH 139
Query: 363 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 542
LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSD 199
Query: 543 CAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNL 722
CAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 723 GSLSQEFISHWLLMHQSYVPI---------ELSMSN*A*REITNSCFEHNNQMVKCDPRN 875
+ H+ L +Y P+ +L++S EITN+CFE NQMVKCDPR+
Sbjct: 260 VPYPR---IHFPL--ATYAPVISAEKAYHEQLTVS-----EITNACFEPANQMVKCDPRH 309
Query: 876 GKYMSCCLLYR 908
GKYM+CCLLYR
Sbjct: 310 GKYMACCLLYR 320
>sp|Q91060|TBA_NOTVI Tubulin alpha chain
Length = 450
Score = 459 bits (1181), Expect = e-129
Identities = 231/311 (74%), Positives = 257/311 (82%), Gaps = 9/311 (2%)
Frame = +3
Query: 3 CWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRALFVDLEPSVIDEVR 182
CWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+FVDLEPSVIDEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAIFVDLEPSVIDEVR 79
Query: 183 NGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFH 362
G YRQLFHPEQLISGKEDAANNYARGHYT+GKE+IDQVLDR+RK+AD CTGLQGFL+FH
Sbjct: 80 TGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDQVLDRMRKLADQCTGLQGFLVFH 139
Query: 363 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 542
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 543 CAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNL 722
CAFMVDNEAIYDIC++NL IERP+YT+LNRLI QIVSSITASLRFDGALNVDL EFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPSYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 723 GSLSQEFISHWLLMHQSYVPI---------ELSMSN*A*REITNSCFEHNNQMVKCDPRN 875
+ H+ L +Y P+ +LS++ EITN+CFE NQMVKCDPR+
Sbjct: 260 VPYPR---IHFPL--ATYAPVISAEKAYHEQLSVA-----EITNACFEPANQMVKCDPRH 309
Query: 876 GKYMSCCLLYR 908
GKYM+CCLLYR
Sbjct: 310 GKYMACCLLYR 320
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 459 bits (1181), Expect = e-129
Identities = 230/311 (73%), Positives = 257/311 (82%), Gaps = 9/311 (2%)
Frame = +3
Query: 3 CWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRALFVDLEPSVIDEVR 182
CWELYCLEHGIQ DGQMPS+K G +D FNTFF ETG GK+VPRA+FVDLEP+VIDE+R
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFCETGAGKHVPRAVFVDLEPTVIDEIR 79
Query: 183 NGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFH 362
G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDRIRK+ADNC GLQGFL+FH
Sbjct: 80 TGVYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDIVLDRIRKLADNCAGLQGFLIFH 139
Query: 363 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 542
LLMERLSVDYGKKSKLEFA+YPAPQ+ATAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVATAVVEPYNSILTTHTTLEHSD 199
Query: 543 CAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNL 722
CAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 723 GSLSQEFISHWLLMHQSYVPI---------ELSMSN*A*REITNSCFEHNNQMVKCDPRN 875
+ H+ L+ +Y P+ +LS+S EITN+CFE NQMVKCDPR+
Sbjct: 260 VPYPR---IHFPLV--TYAPVISAEKAYHEQLSVS-----EITNACFEPANQMVKCDPRH 309
Query: 876 GKYMSCCLLYR 908
GKYM+CCLLYR
Sbjct: 310 GKYMACCLLYR 320
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 458 bits (1179), Expect = e-129
Identities = 228/311 (73%), Positives = 258/311 (82%), Gaps = 9/311 (2%)
Frame = +3
Query: 3 CWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRALFVDLEPSVIDEVR 182
CWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+FVDLEP+V+DEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 79
Query: 183 NGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFH 362
G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDRIRK+AD CTGLQGFL+FH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 139
Query: 363 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 542
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 543 CAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNL 722
CAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 723 GSLSQEFISHWLLMHQSYVPI---------ELSMSN*A*REITNSCFEHNNQMVKCDPRN 875
+ H+ L+ +Y P+ +LS++ EITN+CFE NQMVKCDPR+
Sbjct: 260 VPYPR---IHFPLV--TYAPVISAEKAYHEQLSVA-----EITNACFEPANQMVKCDPRH 309
Query: 876 GKYMSCCLLYR 908
GKYM+CC+LYR
Sbjct: 310 GKYMACCMLYR 320
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 458 bits (1179), Expect = e-129
Identities = 231/311 (74%), Positives = 257/311 (82%), Gaps = 9/311 (2%)
Frame = +3
Query: 3 CWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRALFVDLEPSVIDEVR 182
CWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+FVDLEP+V+DEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 79
Query: 183 NGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFH 362
G YRQLFHPEQLI+GKEDAANNYARGHYTVGKE+ID VLDRIRK+AD CTGLQGFL+FH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFH 139
Query: 363 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 542
LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSD 199
Query: 543 CAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNL 722
CAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 723 GSLSQEFISHWLLMHQSYVPI---------ELSMSN*A*REITNSCFEHNNQMVKCDPRN 875
+ H+ L +Y P+ +L+++ EITN+CFE NQMVKCDPR+
Sbjct: 260 VPYPR---IHFPL--ATYAPVISAEKAYHEQLTVA-----EITNACFEPANQMVKCDPRH 309
Query: 876 GKYMSCCLLYR 908
GKYMSCC+LYR
Sbjct: 310 GKYMSCCMLYR 320
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 457 bits (1177), Expect = e-128
Identities = 230/311 (73%), Positives = 257/311 (82%), Gaps = 9/311 (2%)
Frame = +3
Query: 3 CWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRALFVDLEPSVIDEVR 182
CWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+FVDLEP+VIDEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR 79
Query: 183 NGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFH 362
G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE+ID VLDRIRK+AD CTGLQGFL+FH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFH 139
Query: 363 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 542
LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 543 CAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNL 722
CAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 723 GSLSQEFISHWLLMHQSYVPI---------ELSMSN*A*REITNSCFEHNNQMVKCDPRN 875
+ H+ L +Y P+ +LS++ EITN+CFE NQMVKCDPR+
Sbjct: 260 VPYPR---IHFPL--ATYAPVISAEKAYHEQLSVA-----EITNACFEPANQMVKCDPRH 309
Query: 876 GKYMSCCLLYR 908
GKYM+CCLLYR
Sbjct: 310 GKYMACCLLYR 320
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 457 bits (1175), Expect = e-128
Identities = 230/311 (73%), Positives = 258/311 (82%), Gaps = 9/311 (2%)
Frame = +3
Query: 3 CWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRALFVDLEPSVIDEVR 182
CWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+FVDLEPSV+DEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPSVVDEVR 79
Query: 183 NGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFH 362
+G YRQLFHPEQLI+GKEDAANNYARGHYTVGKELID VLDRIRK+AD CTGLQGFL+FH
Sbjct: 80 SGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGFLIFH 139
Query: 363 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 542
LLMERLSVDYGKKSKLEF+VYPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 543 CAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNL 722
CAFMVDNEAIYDIC++NL IERP+YT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 723 GSLSQEFISHWLLMHQSYVPI---------ELSMSN*A*REITNSCFEHNNQMVKCDPRN 875
+ H+ L +Y P+ +LS++ EITN+CFE NQ+VKCDPR+
Sbjct: 260 VPYPR---IHFPL--ATYAPVISAEKAYHEQLSVA-----EITNACFEPANQLVKCDPRH 309
Query: 876 GKYMSCCLLYR 908
GKYM+CC+LYR
Sbjct: 310 GKYMACCMLYR 320
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 456 bits (1174), Expect = e-128
Identities = 230/311 (73%), Positives = 256/311 (82%), Gaps = 9/311 (2%)
Frame = +3
Query: 3 CWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRALFVDLEPSVIDEVR 182
CWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+FVDLEP+VIDEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR 79
Query: 183 NGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFH 362
G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE+ID VLDRIRK+AD CTGLQGFL+FH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFH 139
Query: 363 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 542
LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 543 CAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNL 722
CAFMVDNEAIYDIC++NL IERPTYT+LNRLI QIVSSITASLRFDGALNVDL EFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 723 GSLSQEFISHWLLMHQSYVPI---------ELSMSN*A*REITNSCFEHNNQMVKCDPRN 875
+ H+ L +Y P+ +LS+S EITN+CFE NQMVKCDPR+
Sbjct: 260 VPYPR---IHFPL--ATYAPVISAEKAYHEQLSVS-----EITNACFEPANQMVKCDPRH 309
Query: 876 GKYMSCCLLYR 908
GKYM+CCLLYR
Sbjct: 310 GKYMACCLLYR 320
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 456 bits (1174), Expect = e-128
Identities = 229/311 (73%), Positives = 257/311 (82%), Gaps = 9/311 (2%)
Frame = +3
Query: 3 CWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRALFVDLEPSVIDEVR 182
CWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+FVDLEP+VIDEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR 79
Query: 183 NGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFH 362
G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE+ID VLDRIRK+AD CTGLQGF +FH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFH 139
Query: 363 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 542
LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 543 CAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNL 722
CAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 723 GSLSQEFISHWLLMHQSYVPI---------ELSMSN*A*REITNSCFEHNNQMVKCDPRN 875
+ +H+ L +Y P+ +LS++ EITN+CFE NQMVKCDPR+
Sbjct: 260 VPYPR---AHFPL--ATYAPVISAEKAYHEQLSVA-----EITNACFEPANQMVKCDPRH 309
Query: 876 GKYMSCCLLYR 908
GKYM+CCLLYR
Sbjct: 310 GKYMACCLLYR 320
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 456 bits (1173), Expect = e-128
Identities = 228/311 (73%), Positives = 257/311 (82%), Gaps = 9/311 (2%)
Frame = +3
Query: 3 CWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPRALFVDLEPSVIDEVR 182
CWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPRA+FVDLEP+V+DEVR
Sbjct: 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 79
Query: 183 NGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFH 362
G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDRIRK+AD CTGLQGFL+FH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFH 139
Query: 363 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 542
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 543 CAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNL 722
CAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 723 GSLSQEFISHWLLMHQSYVPI---------ELSMSN*A*REITNSCFEHNNQMVKCDPRN 875
+ H+ L +Y P+ +LS++ EITN+CFE NQMVKCDPR+
Sbjct: 260 VPYPR---IHFPL--ATYAPVISAEKAYHEQLSVA-----EITNACFEPANQMVKCDPRH 309
Query: 876 GKYMSCCLLYR 908
GKYM+CC+LYR
Sbjct: 310 GKYMACCMLYR 320
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,926,468
Number of Sequences: 369166
Number of extensions: 2236323
Number of successful extensions: 6657
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5914
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9222552960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)