Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_N18
(871 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 478 e-135
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 478 e-135
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 478 e-135
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 478 e-135
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 478 e-135
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 476 e-134
sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 476 e-134
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 476 e-134
sp|P52273|TBA_BOMMO Tubulin alpha chain 475 e-134
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 475 e-134
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 478 bits (1230), Expect = e-135
Identities = 227/262 (86%), Positives = 244/262 (93%)
Frame = +2
Query: 2 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSS 181
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 182 ITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFE 361
ITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 362 HNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINY 541
NQMVKCDPR+GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 542 QPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGE 721
QPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 722 FSEAREDLAALEKDYEEVGMDT 787
FSEAREDLAALEKDYEEVG+D+
Sbjct: 418 FSEAREDLAALEKDYEEVGVDS 439
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 478 bits (1230), Expect = e-135
Identities = 227/262 (86%), Positives = 244/262 (93%)
Frame = +2
Query: 2 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSS 181
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 182 ITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFE 361
ITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 362 HNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINY 541
NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 542 QPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGE 721
QPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 722 FSEAREDLAALEKDYEEVGMDT 787
FSEARED+AALEKDYEEVG+D+
Sbjct: 418 FSEAREDMAALEKDYEEVGVDS 439
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 478 bits (1230), Expect = e-135
Identities = 227/262 (86%), Positives = 243/262 (92%)
Frame = +2
Query: 2 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSS 181
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 182 ITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFE 361
ITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAP+I A++A+HEQLSVAEITN+CFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 362 HNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINY 541
NQMVKCDPR+GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 542 QPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGE 721
QPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 722 FSEAREDLAALEKDYEEVGMDT 787
FSEAREDLAALEKDYEEVGMD+
Sbjct: 418 FSEAREDLAALEKDYEEVGMDS 439
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 478 bits (1230), Expect = e-135
Identities = 227/262 (86%), Positives = 244/262 (93%)
Frame = +2
Query: 2 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSS 181
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 182 ITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFE 361
ITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL+VAEITN+CFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFE 297
Query: 362 HNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINY 541
NQMVKCDPR+GKYMSCC+LYRGDVVPKDV QFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 542 QPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGE 721
QPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 722 FSEAREDLAALEKDYEEVGMDT 787
FSEAREDLAALEKDYEEVG+D+
Sbjct: 418 FSEAREDLAALEKDYEEVGVDS 439
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 478 bits (1230), Expect = e-135
Identities = 227/262 (86%), Positives = 244/262 (93%)
Frame = +2
Query: 2 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSS 181
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSS
Sbjct: 139 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 198
Query: 182 ITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFE 361
ITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE
Sbjct: 199 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 258
Query: 362 HNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINY 541
NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINY
Sbjct: 259 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 318
Query: 542 QPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGE 721
QPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 319 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 378
Query: 722 FSEAREDLAALEKDYEEVGMDT 787
FSEARED+AALEKDYEEVG+D+
Sbjct: 379 FSEAREDMAALEKDYEEVGVDS 400
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 476 bits (1226), Expect = e-134
Identities = 226/262 (86%), Positives = 244/262 (93%)
Frame = +2
Query: 2 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSS 181
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 182 ITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFE 361
ITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL+V+EITN+CFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFE 297
Query: 362 HNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINY 541
NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 542 QPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGE 721
QPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 722 FSEAREDLAALEKDYEEVGMDT 787
FSEAREDLAALEKDYEEVG+D+
Sbjct: 418 FSEAREDLAALEKDYEEVGVDS 439
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
M-alpha-4)
sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin)
sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin) (Tubulin H2-alpha)
Length = 448
Score = 476 bits (1224), Expect = e-134
Identities = 226/262 (86%), Positives = 243/262 (92%)
Frame = +2
Query: 2 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSS 181
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLI QIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 237
Query: 182 ITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFE 361
ITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 362 HNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINY 541
NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINY 357
Query: 542 QPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGE 721
QPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 722 FSEAREDLAALEKDYEEVGMDT 787
FSEARED+AALEKDYEEVG+D+
Sbjct: 418 FSEAREDMAALEKDYEEVGIDS 439
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 476 bits (1224), Expect = e-134
Identities = 226/262 (86%), Positives = 243/262 (92%)
Frame = +2
Query: 2 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSS 181
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLI QIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 237
Query: 182 ITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFE 361
ITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 362 HNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINY 541
NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINY 357
Query: 542 QPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGE 721
QPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 722 FSEAREDLAALEKDYEEVGMDT 787
FSEARED+AALEKDYEEVG+D+
Sbjct: 418 FSEAREDMAALEKDYEEVGVDS 439
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 475 bits (1223), Expect = e-134
Identities = 226/262 (86%), Positives = 242/262 (92%)
Frame = +2
Query: 2 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSS 181
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IE PTYT+LNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEPPTYTNLNRLIGQIVSS 237
Query: 182 ITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFE 361
ITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAP+I A++A+HEQLSVAEITN+CFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 362 HNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINY 541
NQMVKCDPR+GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 542 QPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGE 721
QPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 722 FSEAREDLAALEKDYEEVGMDT 787
FSEAREDLAALEKDYEEVGMD+
Sbjct: 418 FSEAREDLAALEKDYEEVGMDS 439
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 475 bits (1223), Expect = e-134
Identities = 225/262 (85%), Positives = 244/262 (93%)
Frame = +2
Query: 2 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSS 181
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERP+YT+LNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSS 237
Query: 182 ITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFE 361
ITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 362 HNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINY 541
NQ+VKCDPR+GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVGINY
Sbjct: 298 PANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 542 QPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGE 721
QPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 722 FSEAREDLAALEKDYEEVGMDT 787
FSEAREDLAALEKDYEEVG+D+
Sbjct: 418 FSEAREDLAALEKDYEEVGVDS 439
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,681,305
Number of Sequences: 369166
Number of extensions: 1803325
Number of successful extensions: 4918
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4664
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)