Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_K11
(701 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 368 e-101
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 368 e-101
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 368 e-101
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 368 e-101
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 368 e-101
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 368 e-101
sp|P52273|TBA_BOMMO Tubulin alpha chain 368 e-101
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 368 e-101
sp|Q9NY65|TBA8_HUMAN Tubulin alpha-8 chain (Alpha-tubulin 8) 367 e-101
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 367 e-101
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
M-alpha-4)
sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin)
sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin) (Tubulin H2-alpha)
Length = 448
Score = 368 bits (944), Expect = e-101
Identities = 174/203 (85%), Positives = 186/203 (91%)
Frame = +3
Query: 3 VSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNS 182
VSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+
Sbjct: 235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 183 CFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVG 362
CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVG 354
Query: 363 INYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGME 542
INYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 543 EGEFSEAREDLAALEKDYEEVGM 611
EGEFSEARED+AALEKDYEEVG+
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGI 437
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 368 bits (944), Expect = e-101
Identities = 174/203 (85%), Positives = 186/203 (91%)
Frame = +3
Query: 3 VSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNS 182
VSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+
Sbjct: 235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 183 CFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVG 362
CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 363 INYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGME 542
INYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 543 EGEFSEAREDLAALEKDYEEVGM 611
EGEFSEAREDLAALEKDYEEVG+
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGV 437
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 368 bits (944), Expect = e-101
Identities = 174/203 (85%), Positives = 186/203 (91%)
Frame = +3
Query: 3 VSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNS 182
VSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+
Sbjct: 235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 183 CFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVG 362
CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 363 INYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGME 542
INYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 543 EGEFSEAREDLAALEKDYEEVGM 611
EGEFSEARED+AALEKDYEEVG+
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGV 437
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 368 bits (944), Expect = e-101
Identities = 174/203 (85%), Positives = 185/203 (91%)
Frame = +3
Query: 3 VSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNS 182
VSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAP+I A++A+HEQLSVAEITN+
Sbjct: 235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 294
Query: 183 CFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVG 362
CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 363 INYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGME 542
INYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 543 EGEFSEAREDLAALEKDYEEVGM 611
EGEFSEAREDLAALEKDYEEVGM
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGM 437
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 368 bits (944), Expect = e-101
Identities = 174/203 (85%), Positives = 186/203 (91%)
Frame = +3
Query: 3 VSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNS 182
VSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+
Sbjct: 235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA 294
Query: 183 CFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVG 362
CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVG 354
Query: 363 INYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGME 542
INYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 543 EGEFSEAREDLAALEKDYEEVGM 611
EGEFSEARED+AALEKDYEEVG+
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGV 437
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 368 bits (944), Expect = e-101
Identities = 174/203 (85%), Positives = 186/203 (91%)
Frame = +3
Query: 3 VSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNS 182
VSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL+VAEITN+
Sbjct: 235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNA 294
Query: 183 CFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVG 362
CFE NQMVKCDPR+GKYMSCC+LYRGDVVPKDV QFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 363 INYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGME 542
INYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 543 EGEFSEAREDLAALEKDYEEVGM 611
EGEFSEAREDLAALEKDYEEVG+
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGV 437
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 368 bits (944), Expect = e-101
Identities = 174/203 (85%), Positives = 185/203 (91%)
Frame = +3
Query: 3 VSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNS 182
VSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAP+I A++A+HEQLSVAEITN+
Sbjct: 235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 294
Query: 183 CFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVG 362
CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 354
Query: 363 INYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGME 542
INYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 543 EGEFSEAREDLAALEKDYEEVGM 611
EGEFSEAREDLAALEKDYEEVGM
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGM 437
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 368 bits (944), Expect = e-101
Identities = 174/203 (85%), Positives = 186/203 (91%)
Frame = +3
Query: 3 VSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNS 182
VSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+
Sbjct: 196 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA 255
Query: 183 CFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVG 362
CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVG
Sbjct: 256 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 315
Query: 363 INYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGME 542
INYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGME
Sbjct: 316 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 375
Query: 543 EGEFSEAREDLAALEKDYEEVGM 611
EGEFSEARED+AALEKDYEEVG+
Sbjct: 376 EGEFSEAREDMAALEKDYEEVGV 398
>sp|Q9NY65|TBA8_HUMAN Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 367 bits (941), Expect = e-101
Identities = 174/202 (86%), Positives = 185/202 (91%)
Frame = +3
Query: 3 VSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNS 182
VSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAPII A++A+HEQLSVAEIT+S
Sbjct: 235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSS 294
Query: 183 CFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVG 362
CFE N+QMVKCDPR+GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVG
Sbjct: 295 CFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVG 354
Query: 363 INYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGME 542
INYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 543 EGEFSEAREDLAALEKDYEEVG 608
EGEFSEAREDLAALEKDYEEVG
Sbjct: 415 EGEFSEAREDLAALEKDYEEVG 436
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 367 bits (941), Expect = e-101
Identities = 173/203 (85%), Positives = 186/203 (91%)
Frame = +3
Query: 3 VSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNS 182
VSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSV+EITN+
Sbjct: 235 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNA 294
Query: 183 CFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVG 362
CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVG
Sbjct: 295 CFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVG 354
Query: 363 INYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGME 542
INYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 414
Query: 543 EGEFSEAREDLAALEKDYEEVGM 611
EGEFSEARED+AALEKDYEEVG+
Sbjct: 415 EGEFSEAREDMAALEKDYEEVGV 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,264,403
Number of Sequences: 369166
Number of extensions: 1368178
Number of successful extensions: 3851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3611
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)