Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_L24
(592 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91060|TBA_NOTVI Tubulin alpha chain 340 2e-93
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 337 1e-92
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 337 2e-92
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 336 2e-92
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 335 7e-92
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 334 9e-92
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 333 1e-91
sp|P08537|TBA_XENLA Tubulin alpha chain 333 1e-91
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 333 1e-91
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 333 1e-91
>sp|Q91060|TBA_NOTVI Tubulin alpha chain
Length = 450
Score = 340 bits (872), Expect = 2e-93
Identities = 161/197 (81%), Positives = 175/197 (88%)
Frame = +1
Query: 1 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 180
IS+H+GQAGVQMGNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 181 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 360
A+FVDLEPSVIDEVR G YRQLFHPEQLISGKEDAANNYARGHYT+GKE+IDQVLDR+RK
Sbjct: 65 AIFVDLEPSVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDQVLDRMRK 124
Query: 361 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 540
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 184
Query: 541 YNSILTTHTTLEHSDCA 591
YNSILTTHTTLEHSDCA
Sbjct: 185 YNSILTTHTTLEHSDCA 201
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 337 bits (865), Expect = 1e-92
Identities = 163/197 (82%), Positives = 174/197 (88%)
Frame = +1
Query: 1 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 180
ISIH+GQAGVQMGNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 181 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 360
A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYTVGKELID VLDRIRK
Sbjct: 65 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDIVLDRIRK 124
Query: 361 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 540
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEP 184
Query: 541 YNSILTTHTTLEHSDCA 591
YNSILTTHTTLEHSDCA
Sbjct: 185 YNSILTTHTTLEHSDCA 201
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 337 bits (863), Expect = 2e-92
Identities = 161/197 (81%), Positives = 174/197 (88%)
Frame = +1
Query: 1 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 180
IS+HIGQAGVQMGNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 181 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 360
A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYTVGKE+ID VLDRIRK
Sbjct: 65 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRK 124
Query: 361 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 540
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEP 184
Query: 541 YNSILTTHTTLEHSDCA 591
YNSILTTHTTLEHSDCA
Sbjct: 185 YNSILTTHTTLEHSDCA 201
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 336 bits (862), Expect = 2e-92
Identities = 161/197 (81%), Positives = 175/197 (88%)
Frame = +1
Query: 1 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 180
ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 181 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 360
A+FVDLEPSV+DEVR+G YRQLFHPEQLI+GKEDAANNYARGHYTVGKELID VLDRIRK
Sbjct: 65 AVFVDLEPSVVDEVRSGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRK 124
Query: 361 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 540
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+VYPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSVYPAPQVSTAVVEP 184
Query: 541 YNSILTTHTTLEHSDCA 591
YNSILTTHTTLEHSDCA
Sbjct: 185 YNSILTTHTTLEHSDCA 201
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 335 bits (858), Expect = 7e-92
Identities = 158/197 (80%), Positives = 174/197 (88%)
Frame = +1
Query: 1 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 180
ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPR 64
Query: 181 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 360
A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDRIRK
Sbjct: 65 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 124
Query: 361 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 540
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEP 184
Query: 541 YNSILTTHTTLEHSDCA 591
YNSILTTHTTLEHSDCA
Sbjct: 185 YNSILTTHTTLEHSDCA 201
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 334 bits (857), Expect = 9e-92
Identities = 157/197 (79%), Positives = 174/197 (88%)
Frame = +1
Query: 1 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 180
ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPR 64
Query: 181 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 360
A+FVDLEP+V+DEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE++D VLDRIRK
Sbjct: 65 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 124
Query: 361 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 540
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 184
Query: 541 YNSILTTHTTLEHSDCA 591
YNSILTTHTTLEHSDCA
Sbjct: 185 YNSILTTHTTLEHSDCA 201
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 333 bits (855), Expect = 1e-91
Identities = 158/197 (80%), Positives = 174/197 (88%)
Frame = +1
Query: 1 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 180
ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 181 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 360
A+FVDLEP+VIDEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE+ID VLDRIRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRK 124
Query: 361 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 540
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEP 184
Query: 541 YNSILTTHTTLEHSDCA 591
YNSILTTHTTLEHSDCA
Sbjct: 185 YNSILTTHTTLEHSDCA 201
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 333 bits (855), Expect = 1e-91
Identities = 158/197 (80%), Positives = 174/197 (88%)
Frame = +1
Query: 1 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 180
ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 181 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 360
A+FVDLEP+VIDEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE+ID VLDRIRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRK 124
Query: 361 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 540
+AD CTGLQGFL+FH LL+ERLSVDYGKKSKLEFA+YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLVFHSFGGGTGSGFTSLLLERLSVDYGKKSKLEFAIYPAPQVSTAVVEP 184
Query: 541 YNSILTTHTTLEHSDCA 591
YNSILTTHTTLEHSDCA
Sbjct: 185 YNSILTTHTTLEHSDCA 201
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 333 bits (855), Expect = 1e-91
Identities = 158/197 (80%), Positives = 174/197 (88%)
Frame = +1
Query: 1 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 180
ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 181 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 360
A+FVDLEP+VIDEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE+ID VLDRIRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRK 124
Query: 361 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 540
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEP 184
Query: 541 YNSILTTHTTLEHSDCA 591
YNSILTTHTTLEHSDCA
Sbjct: 185 YNSILTTHTTLEHSDCA 201
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 333 bits (855), Expect = 1e-91
Identities = 158/197 (80%), Positives = 174/197 (88%)
Frame = +1
Query: 1 ISIHIGQAGVQMGNACWELYCLEHGIQQDGQMPSEKPKHGNEDCFNTFFSETGNGKYVPR 180
ISIH+GQAGVQ+GNACWELYCLEHGIQ DGQMPS+K G +D FNTFFSETG GK+VPR
Sbjct: 5 ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64
Query: 181 ALFVDLEPSVIDEVRNGAYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDQVLDRIRK 360
A+FVDLEP+VIDEVR G YRQLFHPEQLI+GKEDAANNYARGHYT+GKE+ID VLDRIRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRK 124
Query: 361 VADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEP 540
+AD CTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEP
Sbjct: 125 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEP 184
Query: 541 YNSILTTHTTLEHSDCA 591
YNSILTTHTTLEHSDCA
Sbjct: 185 YNSILTTHTTLEHSDCA 201
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,873,834
Number of Sequences: 369166
Number of extensions: 1466037
Number of successful extensions: 4888
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4645
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)