Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_N21
(268 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 123 1e-28
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 123 1e-28
sp|P52273|TBA_BOMMO Tubulin alpha chain 123 1e-28
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?) 122 3e-28
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 122 3e-28
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 122 3e-28
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 122 3e-28
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 122 3e-28
sp|P50719|TBA_HAECO Tubulin alpha chain 122 3e-28
sp|Q06331|TBA_OCTDO Tubulin alpha chain 122 3e-28
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 123 bits (309), Expect = 1e-28
Identities = 58/59 (98%), Positives = 59/59 (100%)
Frame = +2
Query: 2 SNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 178
SNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM
Sbjct: 379 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 437
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 123 bits (309), Expect = 1e-28
Identities = 58/59 (98%), Positives = 59/59 (100%)
Frame = +2
Query: 2 SNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 178
SNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM
Sbjct: 379 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 437
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 123 bits (309), Expect = 1e-28
Identities = 58/59 (98%), Positives = 59/59 (100%)
Frame = +2
Query: 2 SNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 178
SNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM
Sbjct: 379 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 437
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
Length = 450
Score = 122 bits (306), Expect = 3e-28
Identities = 57/59 (96%), Positives = 59/59 (100%)
Frame = +2
Query: 2 SNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 178
SNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+
Sbjct: 379 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGL 437
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 122 bits (306), Expect = 3e-28
Identities = 57/59 (96%), Positives = 59/59 (100%)
Frame = +2
Query: 2 SNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 178
SNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALEKDYEEVGM
Sbjct: 379 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGM 437
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 122 bits (305), Expect = 3e-28
Identities = 57/59 (96%), Positives = 59/59 (100%)
Frame = +2
Query: 2 SNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 178
SNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+
Sbjct: 379 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 122 bits (305), Expect = 3e-28
Identities = 57/59 (96%), Positives = 59/59 (100%)
Frame = +2
Query: 2 SNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 178
SNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+
Sbjct: 379 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 122 bits (305), Expect = 3e-28
Identities = 57/59 (96%), Positives = 59/59 (100%)
Frame = +2
Query: 2 SNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 178
SNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+
Sbjct: 379 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
>sp|P50719|TBA_HAECO Tubulin alpha chain
Length = 450
Score = 122 bits (305), Expect = 3e-28
Identities = 57/59 (96%), Positives = 59/59 (100%)
Frame = +2
Query: 2 SNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 178
SNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+
Sbjct: 379 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
>sp|Q06331|TBA_OCTDO Tubulin alpha chain
Length = 451
Score = 122 bits (305), Expect = 3e-28
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +2
Query: 2 SNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 178
SNTTA+AEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+
Sbjct: 379 SNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGL 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,106,601
Number of Sequences: 369166
Number of extensions: 316295
Number of successful extensions: 1430
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)