Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_H02
(760 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 429 e-120
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 429 e-120
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 428 e-120
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 428 e-120
sp|P30436|TBA_ONCKE Tubulin alpha chain 427 e-119
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 427 e-119
sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 426 e-119
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 426 e-119
sp|Q5R1W4|TBAK_PANTR Tubulin alpha-ubiquitous chain (Alpha-... 426 e-119
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 425 e-119
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 429 bits (1103), Expect = e-120
Identities = 207/253 (81%), Positives = 223/253 (88%)
Frame = +1
Query: 1 QGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 180
QGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTH
Sbjct: 133 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTH 192
Query: 181 TTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDL 360
TTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL
Sbjct: 193 TTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDL 252
Query: 361 NEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKY 540
EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL+VAEITN+CFE NQMVKCDPR+GKY
Sbjct: 253 TEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKY 312
Query: 541 MSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQ 720
MSCC+LYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQ
Sbjct: 313 MSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQ 372
Query: 721 RAVCMLSNTTAIA 759
RAVCMLSNTTAIA
Sbjct: 373 RAVCMLSNTTAIA 385
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 429 bits (1102), Expect = e-120
Identities = 206/253 (81%), Positives = 223/253 (88%)
Frame = +1
Query: 1 QGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 180
QGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTH 192
Query: 181 TTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDL 360
TTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL
Sbjct: 193 TTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDL 252
Query: 361 NEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKY 540
EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKY
Sbjct: 253 TEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKY 312
Query: 541 MSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQ 720
M+CC+LYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQ
Sbjct: 313 MACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQ 372
Query: 721 RAVCMLSNTTAIA 759
RAVCMLSNTTAIA
Sbjct: 373 RAVCMLSNTTAIA 385
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 428 bits (1101), Expect = e-120
Identities = 206/253 (81%), Positives = 223/253 (88%)
Frame = +1
Query: 1 QGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 180
QGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTH 192
Query: 181 TTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDL 360
TTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL
Sbjct: 193 TTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDL 252
Query: 361 NEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKY 540
EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKY
Sbjct: 253 TEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKY 312
Query: 541 MSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQ 720
M+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQ
Sbjct: 313 MACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQ 372
Query: 721 RAVCMLSNTTAIA 759
RAVCMLSNTTAIA
Sbjct: 373 RAVCMLSNTTAIA 385
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 428 bits (1100), Expect = e-120
Identities = 207/253 (81%), Positives = 223/253 (88%)
Frame = +1
Query: 1 QGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 180
QGFL+FH LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEPYNSILTTH
Sbjct: 133 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTH 192
Query: 181 TTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDL 360
TTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL
Sbjct: 193 TTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDL 252
Query: 361 NEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKY 540
EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL+V+EITN+CFE NQMVKCDPR+GKY
Sbjct: 253 TEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKY 312
Query: 541 MSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQ 720
M+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQ
Sbjct: 313 MACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQ 372
Query: 721 RAVCMLSNTTAIA 759
RAVCMLSNTTAIA
Sbjct: 373 RAVCMLSNTTAIA 385
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 427 bits (1098), Expect = e-119
Identities = 206/253 (81%), Positives = 223/253 (88%)
Frame = +1
Query: 1 QGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 180
QGFL+FH LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTH
Sbjct: 127 QGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTH 186
Query: 181 TTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDL 360
TTLEHSDCAFMVDNEAIYDIC++NL IERP+YT+LNRLIGQIVSSITASLRFDGALNVDL
Sbjct: 187 TTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDL 246
Query: 361 NEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKY 540
EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVA+ITN+CFE NQMVKCDPR+GKY
Sbjct: 247 TEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVADITNACFEPANQMVKCDPRHGKY 306
Query: 541 MSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQ 720
M+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQ
Sbjct: 307 MACCLLYRGDVVPKDVNSAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQ 366
Query: 721 RAVCMLSNTTAIA 759
RAVCMLSNTTAIA
Sbjct: 367 RAVCMLSNTTAIA 379
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 427 bits (1098), Expect = e-119
Identities = 205/253 (81%), Positives = 222/253 (87%)
Frame = +1
Query: 1 QGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 180
QGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTH 192
Query: 181 TTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDL 360
TTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL
Sbjct: 193 TTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDL 252
Query: 361 NEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKY 540
EFQTNLVPYPRIHFPL TYAP+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKY
Sbjct: 253 TEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKY 312
Query: 541 MSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQ 720
M+CC+LYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQ
Sbjct: 313 MACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQ 372
Query: 721 RAVCMLSNTTAIA 759
RAVCMLSNTTAIA
Sbjct: 373 RAVCMLSNTTAIA 385
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
M-alpha-4)
sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin)
sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin) (Tubulin H2-alpha)
Length = 448
Score = 426 bits (1095), Expect = e-119
Identities = 205/253 (81%), Positives = 222/253 (87%)
Frame = +1
Query: 1 QGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 180
QGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTH 192
Query: 181 TTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDL 360
TTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLI QIVSSITASLRFDGALNVDL
Sbjct: 193 TTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDL 252
Query: 361 NEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKY 540
EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKY
Sbjct: 253 TEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKY 312
Query: 541 MSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQ 720
M+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQ
Sbjct: 313 MACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQ 372
Query: 721 RAVCMLSNTTAIA 759
RAVCMLSNTTAIA
Sbjct: 373 RAVCMLSNTTAIA 385
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 426 bits (1095), Expect = e-119
Identities = 205/253 (81%), Positives = 222/253 (87%)
Frame = +1
Query: 1 QGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 180
QGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTH 192
Query: 181 TTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDL 360
TTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLI QIVSSITASLRFDGALNVDL
Sbjct: 193 TTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDL 252
Query: 361 NEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKY 540
EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKY
Sbjct: 253 TEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKY 312
Query: 541 MSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQ 720
M+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQ
Sbjct: 313 MACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQ 372
Query: 721 RAVCMLSNTTAIA 759
RAVCMLSNTTAIA
Sbjct: 373 RAVCMLSNTTAIA 385
>sp|Q5R1W4|TBAK_PANTR Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
Length = 451
Score = 426 bits (1095), Expect = e-119
Identities = 205/253 (81%), Positives = 222/253 (87%)
Frame = +1
Query: 1 QGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 180
QGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTH 192
Query: 181 TTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDL 360
TTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLI QIVSSITASLRFDGALNVDL
Sbjct: 193 TTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDL 252
Query: 361 NEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKY 540
EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKY
Sbjct: 253 TEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKY 312
Query: 541 MSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQ 720
M+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQ
Sbjct: 313 MACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQ 372
Query: 721 RAVCMLSNTTAIA 759
RAVCMLSNTTAIA
Sbjct: 373 RAVCMLSNTTAIA 385
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 425 bits (1093), Expect = e-119
Identities = 204/253 (80%), Positives = 221/253 (87%)
Frame = +1
Query: 1 QGFLMFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 180
QGFL+FH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTH 192
Query: 181 TTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDL 360
TTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL
Sbjct: 193 TTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDL 252
Query: 361 NEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKY 540
EFQTNLVPYPRIHFPL TYAP+I A++A+HE LSVAEITN+CFE NQMVKCDPR+GKY
Sbjct: 253 TEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKY 312
Query: 541 MSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQ 720
M+CC+LYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQ
Sbjct: 313 MACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQ 372
Query: 721 RAVCMLSNTTAIA 759
RAVCMLSNTTAIA
Sbjct: 373 RAVCMLSNTTAIA 385
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,291,628
Number of Sequences: 369166
Number of extensions: 1731866
Number of successful extensions: 4241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4146
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)