Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_O21
(791 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 477 e-134
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 476 e-134
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 476 e-134
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 475 e-134
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 475 e-134
sp|P30436|TBA_ONCKE Tubulin alpha chain 474 e-133
sp|Q9NY65|TBA8_HUMAN Tubulin alpha-8 chain (Alpha-tubulin 8) 473 e-133
sp|Q9JJZ2|TBA8_MOUSE Tubulin alpha-8 chain (Alpha-tubulin 8) 473 e-133
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 473 e-133
sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 473 e-133
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 477 bits (1227), Expect = e-134
Identities = 228/263 (86%), Positives = 244/263 (92%)
Frame = +1
Query: 1 LEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTS 180
LEFA+YPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+
Sbjct: 167 LEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 226
Query: 181 LNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQL 360
LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL
Sbjct: 227 LNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL 286
Query: 361 SVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDW 540
+VAEITN+CFE NQMVKCDPR+GKYMSCC+LYRGDVVPKDV QFVDW
Sbjct: 287 TVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 346
Query: 541 CPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEACARLDHKFDLMYSKRAFVH 720
CPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEA ARLDHKFDLMY+KRAFVH
Sbjct: 347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 406
Query: 721 WYVGEGMEEGEFSEAREDLAALE 789
WYVGEGMEEGEFSEAREDLAALE
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALE 429
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 476 bits (1226), Expect = e-134
Identities = 227/263 (86%), Positives = 244/263 (92%)
Frame = +1
Query: 1 LEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTS 180
LEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+
Sbjct: 167 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 226
Query: 181 LNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQL 360
LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL
Sbjct: 227 LNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL 286
Query: 361 SVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDW 540
SVAEITN+CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV QFVDW
Sbjct: 287 SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 346
Query: 541 CPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEACARLDHKFDLMYSKRAFVH 720
CPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEA ARLDHKFDLMY+KRAFVH
Sbjct: 347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 406
Query: 721 WYVGEGMEEGEFSEAREDLAALE 789
WYVGEGMEEGEFSEAREDLAALE
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALE 429
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 476 bits (1224), Expect = e-134
Identities = 228/263 (86%), Positives = 244/263 (92%)
Frame = +1
Query: 1 LEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTS 180
LEFAVYPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+
Sbjct: 167 LEFAVYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 226
Query: 181 LNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQL 360
LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL
Sbjct: 227 LNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL 286
Query: 361 SVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDW 540
+V+EITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDW
Sbjct: 287 TVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDW 346
Query: 541 CPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEACARLDHKFDLMYSKRAFVH 720
CPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEA ARLDHKFDLMY+KRAFVH
Sbjct: 347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 406
Query: 721 WYVGEGMEEGEFSEAREDLAALE 789
WYVGEGMEEGEFSEAREDLAALE
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALE 429
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 475 bits (1223), Expect = e-134
Identities = 226/263 (85%), Positives = 244/263 (92%)
Frame = +1
Query: 1 LEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTS 180
LEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+
Sbjct: 167 LEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 226
Query: 181 LNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQL 360
LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL
Sbjct: 227 LNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL 286
Query: 361 SVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDW 540
SVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDW
Sbjct: 287 SVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDW 346
Query: 541 CPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEACARLDHKFDLMYSKRAFVH 720
CPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEA ARLDHKFDLMY+KRAFVH
Sbjct: 347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 406
Query: 721 WYVGEGMEEGEFSEAREDLAALE 789
WYVGEGMEEGEFSEARED+AALE
Sbjct: 407 WYVGEGMEEGEFSEAREDMAALE 429
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 475 bits (1222), Expect = e-134
Identities = 226/263 (85%), Positives = 243/263 (92%)
Frame = +1
Query: 1 LEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTS 180
LEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+
Sbjct: 167 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 226
Query: 181 LNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQL 360
LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAP+I A++A+HEQL
Sbjct: 227 LNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQL 286
Query: 361 SVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDW 540
SVAEITN+CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV QFVDW
Sbjct: 287 SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 346
Query: 541 CPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEACARLDHKFDLMYSKRAFVH 720
CPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEA ARLDHKFDLMY+KRAFVH
Sbjct: 347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 406
Query: 721 WYVGEGMEEGEFSEAREDLAALE 789
WYVGEGMEEGEFSEAREDLAALE
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALE 429
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 474 bits (1220), Expect = e-133
Identities = 226/263 (85%), Positives = 244/263 (92%)
Frame = +1
Query: 1 LEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTS 180
LEFAVYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERP+YT+
Sbjct: 161 LEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTN 220
Query: 181 LNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQL 360
LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL
Sbjct: 221 LNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL 280
Query: 361 SVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDW 540
SVA+ITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDW
Sbjct: 281 SVADITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNSAIAAIKTKRSIQFVDW 340
Query: 541 CPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEACARLDHKFDLMYSKRAFVH 720
CPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEA ARLDHKFDLMY+KRAFVH
Sbjct: 341 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 400
Query: 721 WYVGEGMEEGEFSEAREDLAALE 789
WYVGEGMEEGEFSEARED+AALE
Sbjct: 401 WYVGEGMEEGEFSEAREDMAALE 423
>sp|Q9NY65|TBA8_HUMAN Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 473 bits (1218), Expect = e-133
Identities = 226/263 (85%), Positives = 243/263 (92%)
Frame = +1
Query: 1 LEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTS 180
LEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+
Sbjct: 167 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 226
Query: 181 LNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQL 360
LNRLI QIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAPII A++A+HEQL
Sbjct: 227 LNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQL 286
Query: 361 SVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDW 540
SVAEIT+SCFE N+QMVKCDPR+GKYM+CC+LYRGDVVPKDV QFVDW
Sbjct: 287 SVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDW 346
Query: 541 CPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEACARLDHKFDLMYSKRAFVH 720
CPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEA ARLDHKFDLMY+KRAFVH
Sbjct: 347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 406
Query: 721 WYVGEGMEEGEFSEAREDLAALE 789
WYVGEGMEEGEFSEAREDLAALE
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALE 429
>sp|Q9JJZ2|TBA8_MOUSE Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 473 bits (1218), Expect = e-133
Identities = 226/263 (85%), Positives = 243/263 (92%)
Frame = +1
Query: 1 LEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTS 180
LEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+
Sbjct: 167 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 226
Query: 181 LNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQL 360
LNRLI QIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAPII A++A+HEQL
Sbjct: 227 LNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQL 286
Query: 361 SVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDW 540
SVAEIT+SCFE N+QMVKCDPR+GKYM+CC+LYRGDVVPKDV QFVDW
Sbjct: 287 SVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDW 346
Query: 541 CPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEACARLDHKFDLMYSKRAFVH 720
CPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEA ARLDHKFDLMY+KRAFVH
Sbjct: 347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 406
Query: 721 WYVGEGMEEGEFSEAREDLAALE 789
WYVGEGMEEGEFSEAREDLAALE
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALE 429
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 473 bits (1217), Expect = e-133
Identities = 225/263 (85%), Positives = 242/263 (92%)
Frame = +1
Query: 1 LEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTS 180
LEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+
Sbjct: 167 LEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 226
Query: 181 LNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQL 360
LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAP+I A++A+HE L
Sbjct: 227 LNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEML 286
Query: 361 SVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDW 540
SVAEITN+CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV QFVDW
Sbjct: 287 SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 346
Query: 541 CPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEACARLDHKFDLMYSKRAFVH 720
CPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEA ARLDHKFDLMY+KRAFVH
Sbjct: 347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 406
Query: 721 WYVGEGMEEGEFSEAREDLAALE 789
WYVGEGMEEGEFSEAREDLAALE
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALE 429
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
M-alpha-4)
sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin)
sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin) (Tubulin H2-alpha)
Length = 448
Score = 473 bits (1217), Expect = e-133
Identities = 225/263 (85%), Positives = 243/263 (92%)
Frame = +1
Query: 1 LEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPTYTS 180
LEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPTYT+
Sbjct: 167 LEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 226
Query: 181 LNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQL 360
LNRLI QIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL
Sbjct: 227 LNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL 286
Query: 361 SVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDW 540
SVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QFVDW
Sbjct: 287 SVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDW 346
Query: 541 CPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEACARLDHKFDLMYSKRAFVH 720
CPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEA ARLDHKFDLMY+KRAFVH
Sbjct: 347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 406
Query: 721 WYVGEGMEEGEFSEAREDLAALE 789
WYVGEGMEEGEFSEARED+AALE
Sbjct: 407 WYVGEGMEEGEFSEAREDMAALE 429
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,093,125
Number of Sequences: 369166
Number of extensions: 1740327
Number of successful extensions: 4751
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4501
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)