Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_025_K04 (756 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 420 e-117 sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 419 e-117 sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 419 e-117 sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 418 e-117 sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 418 e-117 sp|Q91060|TBA_NOTVI Tubulin alpha chain 418 e-117 sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 418 e-117 sp|P06603|TBA1_DROME Tubulin alpha-1 chain 417 e-116 sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 417 e-116 sp|P09644|TBA5_CHICK Tubulin alpha-5 chain 417 e-116
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain Length = 452 Score = 420 bits (1080), Expect = e-117 Identities = 203/251 (80%), Positives = 219/251 (87%) Frame = +3 Query: 3 ARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGK 182 ARGHYTVGKE+ID VLDRIRK+AD CTGLQGFL+FH LLMERLSVDYGK Sbjct: 104 ARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGK 163 Query: 183 KSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPT 362 KSKLEFA+YPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPT Sbjct: 164 KSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223 Query: 363 YTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFH 542 YT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+H Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYH 283 Query: 543 EQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQF 722 EQL+VAEITN+CFE NQMVKCDPR+GKYMSCC+LYRGDVVPKDV QF Sbjct: 284 EQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQF 343 Query: 723 VDWCPTGFKVG 755 VDWCPTGFKVG Sbjct: 344 VDWCPTGFKVG 354
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain Length = 452 Score = 419 bits (1078), Expect = e-117 Identities = 204/251 (81%), Positives = 219/251 (87%) Frame = +3 Query: 3 ARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGK 182 ARGHYTVGKELID VLDRIRK+AD CTGLQGFL+FH LLMERLSVDYGK Sbjct: 104 ARGHYTVGKELIDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGK 163 Query: 183 KSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPT 362 KSKLEFAVYPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPT Sbjct: 164 KSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223 Query: 363 YTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFH 542 YT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+H Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYH 283 Query: 543 EQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQF 722 EQL+V+EITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QF Sbjct: 284 EQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQF 343 Query: 723 VDWCPTGFKVG 755 VDWCPTGFKVG Sbjct: 344 VDWCPTGFKVG 354
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype M-alpha-1) sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II) sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1) sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1) Length = 451 Score = 419 bits (1077), Expect = e-117 Identities = 201/251 (80%), Positives = 219/251 (87%) Frame = +3 Query: 3 ARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGK 182 ARGHYT+GKE+ID VLDRIRK+AD CTGLQGFL+FH LLMERLSVDYGK Sbjct: 104 ARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGK 163 Query: 183 KSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPT 362 KSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPT Sbjct: 164 KSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223 Query: 363 YTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFH 542 YT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+H Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYH 283 Query: 543 EQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQF 722 EQLSVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QF Sbjct: 284 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQF 343 Query: 723 VDWCPTGFKVG 755 VDWCPTGFKVG Sbjct: 344 VDWCPTGFKVG 354
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) Length = 451 Score = 418 bits (1075), Expect = e-117 Identities = 200/251 (79%), Positives = 218/251 (86%) Frame = +3 Query: 3 ARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGK 182 ARGHYT+GKE++D VLDRIRK+ADNC GLQGFL+FH LLMERLSVDYGK Sbjct: 104 ARGHYTIGKEIVDIVLDRIRKLADNCAGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGK 163 Query: 183 KSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPT 362 KSKLEFA+YPAPQ+ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPT Sbjct: 164 KSKLEFAIYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223 Query: 363 YTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFH 542 YT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAP+I A++A+H Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 283 Query: 543 EQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQF 722 EQLSV+EITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QF Sbjct: 284 EQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQF 343 Query: 723 VDWCPTGFKVG 755 VDWCPTGFKVG Sbjct: 344 VDWCPTGFKVG 354
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin isotype M-alpha-3/7) sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3) sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2) Length = 450 Score = 418 bits (1074), Expect = e-117 Identities = 200/251 (79%), Positives = 219/251 (87%) Frame = +3 Query: 3 ARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGK 182 ARGHYT+GKE++D VLDRIRK+AD CTGLQGFL+FH LLMERLSVDYGK Sbjct: 104 ARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGK 163 Query: 183 KSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPT 362 KSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPT Sbjct: 164 KSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223 Query: 363 YTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFH 542 YT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+H Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYH 283 Query: 543 EQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQF 722 EQLSVAEITN+CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV QF Sbjct: 284 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 343 Query: 723 VDWCPTGFKVG 755 VDWCPTGFKVG Sbjct: 344 VDWCPTGFKVG 354
>sp|Q91060|TBA_NOTVI Tubulin alpha chain Length = 450 Score = 418 bits (1074), Expect = e-117 Identities = 200/251 (79%), Positives = 219/251 (87%) Frame = +3 Query: 3 ARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGK 182 ARGHYT+GKE+IDQVLDR+RK+AD CTGLQGFL+FH LLMERLSVDYGK Sbjct: 104 ARGHYTIGKEIIDQVLDRMRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGK 163 Query: 183 KSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPT 362 KSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERP+ Sbjct: 164 KSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPS 223 Query: 363 YTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFH 542 YT+LNRLI QIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+H Sbjct: 224 YTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYH 283 Query: 543 EQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQF 722 EQLSVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QF Sbjct: 284 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQF 343 Query: 723 VDWCPTGFKVG 755 VDWCPTGFKVG Sbjct: 344 VDWCPTGFKVG 354
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) Length = 451 Score = 418 bits (1074), Expect = e-117 Identities = 201/251 (80%), Positives = 218/251 (86%) Frame = +3 Query: 3 ARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGK 182 ARGHYT+GKE++D VLDRIRK+AD CTGLQGFL+FH LLMERLSVDYGK Sbjct: 104 ARGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGK 163 Query: 183 KSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPT 362 KSKLEFAVYPAPQ+ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERP+ Sbjct: 164 KSKLEFAVYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPS 223 Query: 363 YTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFH 542 YT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAP+I A++A+H Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 283 Query: 543 EQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQF 722 EQLSVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QF Sbjct: 284 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIANIKTKRTIQF 343 Query: 723 VDWCPTGFKVG 755 VDWCPTGFKVG Sbjct: 344 VDWCPTGFKVG 354
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain Length = 450 Score = 417 bits (1073), Expect = e-116 Identities = 199/251 (79%), Positives = 218/251 (86%) Frame = +3 Query: 3 ARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGK 182 ARGHYT+GKE++D VLDRIRK+AD CTGLQGFL+FH LLMERLSVDYGK Sbjct: 104 ARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGK 163 Query: 183 KSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPT 362 KSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPT Sbjct: 164 KSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223 Query: 363 YTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFH 542 YT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAP+I A++A+H Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 283 Query: 543 EQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQF 722 EQLSVAEITN+CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV QF Sbjct: 284 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 343 Query: 723 VDWCPTGFKVG 755 VDWCPTGFKVG Sbjct: 344 VDWCPTGFKVG 354
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain Length = 451 Score = 417 bits (1072), Expect = e-116 Identities = 201/251 (80%), Positives = 219/251 (87%) Frame = +3 Query: 3 ARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGK 182 ARGHYTVGKELID VLDRIRK+AD CTGLQGFL+FH LLMERLSVDYGK Sbjct: 104 ARGHYTVGKELIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGK 163 Query: 183 KSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPT 362 KSKLEF+VYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERP+ Sbjct: 164 KSKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPS 223 Query: 363 YTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFH 542 YT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+H Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYH 283 Query: 543 EQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQF 722 EQLSVAEITN+CFE NQ+VKCDPR+GKYM+CC+LYRGDVVPKDV QF Sbjct: 284 EQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 343 Query: 723 VDWCPTGFKVG 755 VDWCPTGFKVG Sbjct: 344 VDWCPTGFKVG 354
>sp|P09644|TBA5_CHICK Tubulin alpha-5 chain Length = 448 Score = 417 bits (1072), Expect = e-116 Identities = 201/251 (80%), Positives = 217/251 (86%) Frame = +3 Query: 3 ARGHYTVGKELIDQVLDRIRKVADNCTGLQGFLMFHXXXXXXXXXXXXLLMERLSVDYGK 182 ARGHYT+GKE+IDQVLDRIRK+AD CTGLQGFL FH LLMERLS DYGK Sbjct: 104 ARGHYTIGKEIIDQVLDRIRKLADQCTGLQGFLCFHSFGGGTGSGFTSLLMERLSGDYGK 163 Query: 183 KSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKKNLGIERPT 362 KSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++NL IERPT Sbjct: 164 KSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223 Query: 363 YTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPIICADRAFH 542 YT+LNRLI QIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+I A++A+H Sbjct: 224 YTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYH 283 Query: 543 EQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQF 722 EQLSVAEITNSCFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV QF Sbjct: 284 EQLSVAEITNSCFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQF 343 Query: 723 VDWCPTGFKVG 755 VDWCPTGFKVG Sbjct: 344 VDWCPTGFKVG 354
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,307,336 Number of Sequences: 369166 Number of extensions: 1763683 Number of successful extensions: 4411 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4319 length of database: 68,354,980 effective HSP length: 108 effective length of database: 48,403,600 effective search space used: 6921714800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)