Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_H08
(930 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 504 e-142
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 503 e-142
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 503 e-142
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 502 e-142
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 502 e-142
sp|P30436|TBA_ONCKE Tubulin alpha chain 501 e-141
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 500 e-141
sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 500 e-141
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 500 e-141
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 500 e-141
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 504 bits (1297), Expect = e-142
Identities = 240/275 (87%), Positives = 257/275 (93%)
Frame = +1
Query: 1 RLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKK 180
RLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++
Sbjct: 156 RLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 NLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPI 360
NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 361 ICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXX 540
I A++A+HEQL+VAEITN+CFE NQMVKCDPR+GKYMSCC+LYRGDVVPKDV
Sbjct: 276 ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATI 335
Query: 541 XXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKF 720
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DLMYSKRAFVHWYVGEGMEDGEFSEAREDLAALEK 825
DLMY+KRAFVHWYVGEGME+GEFSEAREDLAALEK
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 503 bits (1296), Expect = e-142
Identities = 239/275 (86%), Positives = 257/275 (93%)
Frame = +1
Query: 1 RLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKK 180
RLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++
Sbjct: 156 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 NLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPI 360
NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 361 ICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXX 540
I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 335
Query: 541 XXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKF 720
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DLMYSKRAFVHWYVGEGMEDGEFSEAREDLAALEK 825
DLMY+KRAFVHWYVGEGME+GEFSEAREDLAALEK
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 503 bits (1294), Expect = e-142
Identities = 240/275 (87%), Positives = 257/275 (93%)
Frame = +1
Query: 1 RLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKK 180
RLSVDYGKKSKLEFAVYPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++
Sbjct: 156 RLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 NLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPI 360
NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 361 ICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXX 540
I A++A+HEQL+V+EITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV
Sbjct: 276 ISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 335
Query: 541 XXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKF 720
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DLMYSKRAFVHWYVGEGMEDGEFSEAREDLAALEK 825
DLMY+KRAFVHWYVGEGME+GEFSEAREDLAALEK
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 502 bits (1293), Expect = e-142
Identities = 238/275 (86%), Positives = 257/275 (93%)
Frame = +1
Query: 1 RLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKK 180
RLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++
Sbjct: 156 RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 NLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPI 360
NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 361 ICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXX 540
I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 335
Query: 541 XXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKF 720
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DLMYSKRAFVHWYVGEGMEDGEFSEAREDLAALEK 825
DLMY+KRAFVHWYVGEGME+GEFSEARED+AALEK
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 502 bits (1292), Expect = e-142
Identities = 238/275 (86%), Positives = 256/275 (93%)
Frame = +1
Query: 1 RLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKK 180
RLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++
Sbjct: 156 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 NLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPI 360
NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAP+
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV 275
Query: 361 ICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXX 540
I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 335
Query: 541 XXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKF 720
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DLMYSKRAFVHWYVGEGMEDGEFSEAREDLAALEK 825
DLMY+KRAFVHWYVGEGME+GEFSEAREDLAALEK
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 501 bits (1290), Expect = e-141
Identities = 238/275 (86%), Positives = 257/275 (93%)
Frame = +1
Query: 1 RLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKK 180
RLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++
Sbjct: 150 RLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 209
Query: 181 NLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPI 360
NL IERP+YT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+
Sbjct: 210 NLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 269
Query: 361 ICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXX 540
I A++A+HEQLSVA+ITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV
Sbjct: 270 ISAEKAYHEQLSVADITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNSAIAAI 329
Query: 541 XXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKF 720
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 330 KTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 389
Query: 721 DLMYSKRAFVHWYVGEGMEDGEFSEAREDLAALEK 825
DLMY+KRAFVHWYVGEGME+GEFSEARED+AALEK
Sbjct: 390 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 424
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 500 bits (1287), Expect = e-141
Identities = 237/275 (86%), Positives = 255/275 (92%)
Frame = +1
Query: 1 RLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKK 180
RLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++
Sbjct: 156 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 NLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPI 360
NL IERPTYT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPL TYAP+
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV 275
Query: 361 ICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXX 540
I A++A+HE LSVAEITN+CFE NQMVKCDPR+GKYM+CC+LYRGDVVPKDV
Sbjct: 276 ISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 335
Query: 541 XXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKF 720
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DLMYSKRAFVHWYVGEGMEDGEFSEAREDLAALEK 825
DLMY+KRAFVHWYVGEGME+GEFSEAREDLAALEK
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
M-alpha-4)
sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin)
sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin) (Tubulin H2-alpha)
Length = 448
Score = 500 bits (1287), Expect = e-141
Identities = 237/275 (86%), Positives = 256/275 (93%)
Frame = +1
Query: 1 RLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKK 180
RLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++
Sbjct: 156 RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 NLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPI 360
NL IERPTYT+LNRLI QIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+
Sbjct: 216 NLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 361 ICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXX 540
I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAI 335
Query: 541 XXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKF 720
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DLMYSKRAFVHWYVGEGMEDGEFSEAREDLAALEK 825
DLMY+KRAFVHWYVGEGME+GEFSEARED+AALEK
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 500 bits (1287), Expect = e-141
Identities = 237/275 (86%), Positives = 256/275 (93%)
Frame = +1
Query: 1 RLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKK 180
RLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++
Sbjct: 156 RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 NLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPI 360
NL IERPTYT+LNRLI QIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+
Sbjct: 216 NLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 361 ICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXX 540
I A++A+HEQLSVAEITN+CFE NQMVKCDPR+GKYM+CCLLYRGDVVPKDV
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 335
Query: 541 XXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKF 720
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DLMYSKRAFVHWYVGEGMEDGEFSEAREDLAALEK 825
DLMY+KRAFVHWYVGEGME+GEFSEARED+AALEK
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 500 bits (1287), Expect = e-141
Identities = 237/275 (86%), Positives = 257/275 (93%)
Frame = +1
Query: 1 RLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKK 180
RLSVDYGKKSKLEF+VYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC++
Sbjct: 156 RLSVDYGKKSKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 NLGIERPTYTSLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPI 360
NL IERP+YT+LNRLIGQIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP+
Sbjct: 216 NLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 361 ICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRNGKYMSCCLLYRGDVVPKDVXXXXXXX 540
I A++A+HEQLSVAEITN+CFE NQ+VKCDPR+GKYM+CC+LYRGDVVPKDV
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 335
Query: 541 XXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMAKVQRAVCMLSNTTAIAEAWARLDHKF 720
QFVDWCPTGFKVGINYQPPTV+PGGD+AKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DLMYSKRAFVHWYVGEGMEDGEFSEAREDLAALEK 825
DLMY+KRAFVHWYVGEGME+GEFSEAREDLAALEK
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,441,391
Number of Sequences: 369166
Number of extensions: 2149635
Number of successful extensions: 5991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5740
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9558791870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)