Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_F04
(667 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 341 1e-93
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 341 1e-93
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 341 1e-93
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 341 1e-93
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 341 1e-93
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 341 1e-93
sp|P52273|TBA_BOMMO Tubulin alpha chain 341 1e-93
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 341 1e-93
sp|Q9NY65|TBA8_HUMAN Tubulin alpha-8 chain (Alpha-tubulin 8) 340 3e-93
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 340 3e-93
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
M-alpha-4)
sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin)
sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin) (Tubulin H2-alpha)
Length = 448
Score = 341 bits (874), Expect = 1e-93
Identities = 159/188 (84%), Positives = 171/188 (90%)
Frame = +2
Query: 14 VDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRN 193
VDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+
Sbjct: 250 VDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 309
Query: 194 GKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMA 373
GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+A
Sbjct: 310 GKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLA 369
Query: 374 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 553
KVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALE
Sbjct: 370 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALE 429
Query: 554 KDYEEVGM 577
KDYEEVG+
Sbjct: 430 KDYEEVGI 437
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 341 bits (874), Expect = 1e-93
Identities = 159/188 (84%), Positives = 171/188 (90%)
Frame = +2
Query: 14 VDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRN 193
VDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+
Sbjct: 250 VDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 309
Query: 194 GKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMA 373
GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+A
Sbjct: 310 GKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLA 369
Query: 374 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 553
KVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE
Sbjct: 370 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 429
Query: 554 KDYEEVGM 577
KDYEEVG+
Sbjct: 430 KDYEEVGV 437
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 341 bits (874), Expect = 1e-93
Identities = 159/188 (84%), Positives = 171/188 (90%)
Frame = +2
Query: 14 VDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRN 193
VDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+
Sbjct: 250 VDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 309
Query: 194 GKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMA 373
GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+A
Sbjct: 310 GKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLA 369
Query: 374 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 553
KVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALE
Sbjct: 370 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALE 429
Query: 554 KDYEEVGM 577
KDYEEVG+
Sbjct: 430 KDYEEVGV 437
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 341 bits (874), Expect = 1e-93
Identities = 159/188 (84%), Positives = 170/188 (90%)
Frame = +2
Query: 14 VDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRN 193
VDL EFQTNLVPYPRIHFPL TYAP+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+
Sbjct: 250 VDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 309
Query: 194 GKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMA 373
GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+A
Sbjct: 310 GKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLA 369
Query: 374 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 553
KVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE
Sbjct: 370 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 429
Query: 554 KDYEEVGM 577
KDYEEVGM
Sbjct: 430 KDYEEVGM 437
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 341 bits (874), Expect = 1e-93
Identities = 159/188 (84%), Positives = 171/188 (90%)
Frame = +2
Query: 14 VDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRN 193
VDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+
Sbjct: 250 VDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 309
Query: 194 GKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMA 373
GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+A
Sbjct: 310 GKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLA 369
Query: 374 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 553
KVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALE
Sbjct: 370 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALE 429
Query: 554 KDYEEVGM 577
KDYEEVG+
Sbjct: 430 KDYEEVGV 437
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 341 bits (874), Expect = 1e-93
Identities = 159/188 (84%), Positives = 171/188 (90%)
Frame = +2
Query: 14 VDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRN 193
VDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQL+VAEITN+CFE NQMVKCDPR+
Sbjct: 250 VDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRH 309
Query: 194 GKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMA 373
GKYMSCC+LYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+A
Sbjct: 310 GKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLA 369
Query: 374 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 553
KVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE
Sbjct: 370 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 429
Query: 554 KDYEEVGM 577
KDYEEVG+
Sbjct: 430 KDYEEVGV 437
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 341 bits (874), Expect = 1e-93
Identities = 159/188 (84%), Positives = 170/188 (90%)
Frame = +2
Query: 14 VDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRN 193
VDL EFQTNLVPYPRIHFPL TYAP+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+
Sbjct: 250 VDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 309
Query: 194 GKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMA 373
GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+A
Sbjct: 310 GKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLA 369
Query: 374 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 553
KVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE
Sbjct: 370 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 429
Query: 554 KDYEEVGM 577
KDYEEVGM
Sbjct: 430 KDYEEVGM 437
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 341 bits (874), Expect = 1e-93
Identities = 159/188 (84%), Positives = 171/188 (90%)
Frame = +2
Query: 14 VDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRN 193
VDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSVAEITN+CFE NQMVKCDPR+
Sbjct: 211 VDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 270
Query: 194 GKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMA 373
GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+A
Sbjct: 271 GKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLA 330
Query: 374 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 553
KVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALE
Sbjct: 331 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALE 390
Query: 554 KDYEEVGM 577
KDYEEVG+
Sbjct: 391 KDYEEVGV 398
>sp|Q9NY65|TBA8_HUMAN Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 340 bits (871), Expect = 3e-93
Identities = 159/187 (85%), Positives = 170/187 (90%)
Frame = +2
Query: 14 VDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRN 193
VDL EFQTNLVPYPRIHFPL TYAPII A++A+HEQLSVAEIT+SCFE N+QMVKCDPR+
Sbjct: 250 VDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRH 309
Query: 194 GKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMA 373
GKYM+CC+LYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+A
Sbjct: 310 GKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLA 369
Query: 374 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 553
KVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE
Sbjct: 370 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 429
Query: 554 KDYEEVG 574
KDYEEVG
Sbjct: 430 KDYEEVG 436
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 340 bits (871), Expect = 3e-93
Identities = 158/188 (84%), Positives = 171/188 (90%)
Frame = +2
Query: 14 VDLNEFQTNLVPYPRIHFPLATYAPIICADRAFHEQLSVAEITNSCFEHNNQMVKCDPRN 193
VDL EFQTNLVPYPRIHFPLATYAP+I A++A+HEQLSV+EITN+CFE NQMVKCDPR+
Sbjct: 250 VDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRH 309
Query: 194 GKYMSCCLLYRGDVVPKDVXXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTVIPGGDMA 373
GKYM+CCLLYRGDVVPKDV QFVDWCPTGFKVGINYQPPTV+PGGD+A
Sbjct: 310 GKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLA 369
Query: 374 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 553
KVQRAVCMLSNTTAIAEAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALE
Sbjct: 370 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALE 429
Query: 554 KDYEEVGM 577
KDYEEVG+
Sbjct: 430 KDYEEVGV 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,303,774
Number of Sequences: 369166
Number of extensions: 1326396
Number of successful extensions: 3853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3612
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)