Planaria EST Database

DrC_00150

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00150
         (634 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62914|RL11_RAT  60S ribosomal protein L11 >gi|51704334|s...   263   4e-70
sp|Q29205|RL11_PIG  60S ribosomal protein L11                     261   1e-69
sp|Q90YV7|RL11_ICTPU  60S ribosomal protein L11                   260   2e-69
sp|P46222|RL11_DROME  60S ribosomal protein L11                   259   5e-69
sp|Q94300|RL11_CAEEL  60S ribosomal protein L11                   253   3e-67
sp|P42922|RL11_LEICH  60S ribosomal protein L11                   247   2e-65
sp|P48157|RL11_LEIMA  60S ribosomal protein L11                   246   5e-65
sp|P42794|RL112_ARATH  60S ribosomal protein L11-2 (L16)          246   5e-65
sp|P42795|RL111_ARATH  60S ribosomal protein L11-1 (L16A)         246   5e-65
sp|P46287|RL11_MEDSA  60S ribosomal protein L11 (L5)              243   4e-64

>sp|P62914|RL11_RAT 60S ribosomal protein L11
 sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
 sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
 sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
          Length = 178

 Score =  263 bits (671), Expect = 4e-70
 Identities = 128/174 (73%), Positives = 149/174 (85%)
 Frame = +1

Query: 58  AKVETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFA 237
           A+ + E ENPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF 
Sbjct: 2   AQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFG 61

Query: 238 IRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDP 417
           IRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDP
Sbjct: 62  IRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDP 121

Query: 418 SIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 579
           SIGIYG+DFYVVL R G  +A ++++   IGAKHRI+KEEA +WFQQ YDGI+L
Sbjct: 122 SIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175

>sp|Q29205|RL11_PIG 60S ribosomal protein L11
          Length = 178

 Score =  261 bits (666), Expect = 1e-69
 Identities = 127/174 (72%), Positives = 149/174 (85%)
 Frame = +1

Query: 58  AKVETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFA 237
           A+ + E ENPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF 
Sbjct: 2   AQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFG 61

Query: 238 IRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDP 417
           IRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDP
Sbjct: 62  IRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDP 121

Query: 418 SIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 579
           SIGIYG+DFYVVL R G  +A ++++   IGAKHRI+KEEA +WFQQ +DGI+L
Sbjct: 122 SIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175

>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
          Length = 178

 Score =  260 bits (664), Expect = 2e-69
 Identities = 124/167 (74%), Positives = 144/167 (86%)
 Frame = +1

Query: 79  ENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKI 258
           ENPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI
Sbjct: 9   ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKI 68

Query: 259 SVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGM 438
           +V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+
Sbjct: 69  AVHCTVRGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGL 128

Query: 439 DFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 579
           DFYVVL R G  +A +++++ RIG KHRI K EA +WFQQ YDG++L
Sbjct: 129 DFYVVLGRPGFSIADKKRKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175

>sp|P46222|RL11_DROME 60S ribosomal protein L11
          Length = 184

 Score =  259 bits (661), Expect = 5e-69
 Identities = 123/168 (73%), Positives = 143/168 (85%)
 Frame = +1

Query: 79  ENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKI 258
           +NPMR + I KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKAR T+RSF IRRNEKI
Sbjct: 14  KNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 73

Query: 259 SVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGM 438
           +V+ TVRG KAEEILE+GLKV EYEL++  FS  GNFGFGI EHIDLG+KYDPSIGIYG+
Sbjct: 74  AVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGL 133

Query: 439 DFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLN 582
           DFYVVL R G  V +R+++   +G +HR+TKE+A KWFQQ YDGI+LN
Sbjct: 134 DFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181

>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
          Length = 196

 Score =  253 bits (646), Expect = 3e-67
 Identities = 125/171 (73%), Positives = 140/171 (81%)
 Frame = +1

Query: 67  ETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRR 246
           E +  N MR++KI KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+R+F IRR
Sbjct: 12  EKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRR 71

Query: 247 NEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIG 426
           NEKI+V+ TVRG KAEEILEKGLKV EYEL K  FS  GNFGFG+ EHIDLG+KYDP IG
Sbjct: 72  NEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIG 131

Query: 427 IYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 579
           IYGMDFYVVL+R G RV+ RR+   RIG  HR+ KEE  KWFQQ YDGI+L
Sbjct: 132 IYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182

>sp|P42922|RL11_LEICH 60S ribosomal protein L11
          Length = 188

 Score =  247 bits (630), Expect = 2e-65
 Identities = 118/170 (69%), Positives = 142/170 (83%)
 Frame = +1

Query: 67  ETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRR 246
           E++  NPMR+I + KLC+NICVGESGDRLTRA KVLEQL  Q PV S+ARLT+R+F IRR
Sbjct: 4   ESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRR 63

Query: 247 NEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIG 426
           NEKI+V+ TVRGKKAEE+LEKGLKV E+ELK   FS  G+FGFGI EHIDLG+KYDPS G
Sbjct: 64  NEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTG 123

Query: 427 IYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 576
           IYGMDFYVVL R G RVA+R+++ SR+G  H +TKEEA KWF++ +DGI+
Sbjct: 124 IYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173

>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
          Length = 188

 Score =  246 bits (627), Expect = 5e-65
 Identities = 117/170 (68%), Positives = 142/170 (83%)
 Frame = +1

Query: 67  ETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRR 246
           E++  NPMR+I + KLC+NICVGESGDRLTRA KVLEQL  Q PV S+ARLT+R+F IRR
Sbjct: 4   ESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRR 63

Query: 247 NEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIG 426
           NEKI+V+ TVRGKKAEE+LEKGLKV E+ELK   F+  G+FGFGI EHIDLG+KYDPS G
Sbjct: 64  NEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIKYDPSTG 123

Query: 427 IYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 576
           IYGMDFYVVL R G RVA+R+++ SR+G  H +TKEEA KWF++ +DGI+
Sbjct: 124 IYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173

>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
          Length = 182

 Score =  246 bits (627), Expect = 5e-65
 Identities = 123/180 (68%), Positives = 144/180 (80%)
 Frame = +1

Query: 46  MASEAKVETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTI 225
           MASE K+     NPMR IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+
Sbjct: 1   MASEKKLS----NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTV 56

Query: 226 RSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGL 405
           RSF IRRNEKI+ Y TVRG+KA ++LE GLKV EYEL +  FS  G FGFGI EHIDLG+
Sbjct: 57  RSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGI 116

Query: 406 KYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 585
           KYDPS GIYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ  Y+G++LNK
Sbjct: 117 KYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNK 176

>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
          Length = 182

 Score =  246 bits (627), Expect = 5e-65
 Identities = 123/180 (68%), Positives = 144/180 (80%)
 Frame = +1

Query: 46  MASEAKVETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTI 225
           MASE K+     NPMR IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+
Sbjct: 1   MASEKKLS----NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTV 56

Query: 226 RSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGL 405
           RSF IRRNEKI+ Y TVRG+KA ++LE GLKV EYEL +  FS  G FGFGI EHIDLG+
Sbjct: 57  RSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGI 116

Query: 406 KYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 585
           KYDPS GIYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ  Y+G++LNK
Sbjct: 117 KYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176

>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
          Length = 181

 Score =  243 bits (619), Expect = 4e-64
 Identities = 121/180 (67%), Positives = 143/180 (79%)
 Frame = +1

Query: 46  MASEAKVETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTI 225
           MASE K+     NPMR+IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+
Sbjct: 1   MASEKKLS----NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTV 56

Query: 226 RSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGL 405
           RSF IRRNEKI+ Y TVRG KA ++LE GLKV EYEL +  FS  G FGFGI EHIDLG+
Sbjct: 57  RSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGI 116

Query: 406 KYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 585
           KYDPS GIYGMDF+VVL R G RV  RR+ K+R+G +HR+TK++A KWFQ  Y+G++LNK
Sbjct: 117 KYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,379,334
Number of Sequences: 369166
Number of extensions: 1096293
Number of successful extensions: 3779
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3718
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00150

  1. Dr_sW_015_N17
  2. Dr_sW_004_L05
  3. Dr_sW_015_O15
  4. Dr_sW_004_M16
  5. Dr_sW_017_K21
  6. Dr_sW_020_E22
  7. Dr_sW_005_A11
  8. Dr_sW_023_K17
  9. Dr_sW_024_C22
  10. Dr_sW_012_C04
  11. Dr_sW_019_D24
  12. Dr_sW_004_M15
  13. Dr_sW_028_F08
  14. Dr_sW_011_H20
  15. Dr_sW_006_E13
  16. Dr_sW_010_A12
  17. Dr_sW_020_F10
  18. Dr_sW_011_J10
  19. Dr_sW_020_E16
  20. Dr_sW_023_K02
  21. Dr_sW_002_C15
  22. Dr_sW_024_N18