Planarian EST Database


Dr_sW_004_M15

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_004_M15
         (554 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62914|RL11_RAT  60S ribosomal protein L11 >gi|51704334|s...   259   4e-69
sp|P46222|RL11_DROME  60S ribosomal protein L11                   258   5e-69
sp|Q90YV7|RL11_ICTPU  60S ribosomal protein L11                   258   7e-69
sp|Q29205|RL11_PIG  60S ribosomal protein L11                     257   2e-68
sp|Q94300|RL11_CAEEL  60S ribosomal protein L11                   253   2e-67
sp|P42922|RL11_LEICH  60S ribosomal protein L11                   244   8e-65
sp|P48157|RL11_LEIMA  60S ribosomal protein L11                   243   2e-64
sp|P42794|RL112_ARATH  60S ribosomal protein L11-2 (L16)          243   3e-64
sp|P42795|RL111_ARATH  60S ribosomal protein L11-1 (L16A)         243   3e-64
sp|P46287|RL11_MEDSA  60S ribosomal protein L11 (L5)              239   3e-63
>sp|P62914|RL11_RAT 60S ribosomal protein L11
 sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
 sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
 sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
          Length = 178

 Score =  259 bits (661), Expect = 4e-69
 Identities = 125/166 (75%), Positives = 144/166 (86%)
 Frame = +1

Query: 7   NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
           NPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI+
Sbjct: 10  NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIA 69

Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
           V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+D
Sbjct: 70  VHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLD 129

Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 504
           FYVVL R G  +A ++++   IGAKHRI+KEEA +WFQQ YDGI+L
Sbjct: 130 FYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
>sp|P46222|RL11_DROME 60S ribosomal protein L11
          Length = 184

 Score =  258 bits (660), Expect = 5e-69
 Identities = 123/167 (73%), Positives = 142/167 (85%)
 Frame = +1

Query: 7   NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
           NPMR + I KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKAR T+RSF IRRNEKI+
Sbjct: 15  NPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 74

Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
           V+ TVRG KAEEILE+GLKV EYEL++  FS  GNFGFGI EHIDLG+KYDPSIGIYG+D
Sbjct: 75  VHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLD 134

Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLN 507
           FYVVL R G  V +R+++   +G +HR+TKE+A KWFQQ YDGI+LN
Sbjct: 135 FYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
          Length = 178

 Score =  258 bits (659), Expect = 7e-69
 Identities = 123/166 (74%), Positives = 143/166 (86%)
 Frame = +1

Query: 7   NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
           NPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI+
Sbjct: 10  NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIA 69

Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
           V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+D
Sbjct: 70  VHCTVRGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGLD 129

Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 504
           FYVVL R G  +A +++++ RIG KHRI K EA +WFQQ YDG++L
Sbjct: 130 FYVVLGRPGFSIADKKRKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175
>sp|Q29205|RL11_PIG 60S ribosomal protein L11
          Length = 178

 Score =  257 bits (656), Expect = 2e-68
 Identities = 124/166 (74%), Positives = 144/166 (86%)
 Frame = +1

Query: 7   NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
           NPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI+
Sbjct: 10  NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIA 69

Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
           V+ TVRG KAEEILEKGLKV EYEL+K+ FS  GNFGFGI EHIDLG+KYDPSIGIYG+D
Sbjct: 70  VHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLD 129

Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 504
           FYVVL R G  +A ++++   IGAKHRI+KEEA +WFQQ +DGI+L
Sbjct: 130 FYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
          Length = 196

 Score =  253 bits (646), Expect = 2e-67
 Identities = 125/168 (74%), Positives = 139/168 (82%)
 Frame = +1

Query: 1   G*NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEK 180
           G N MR++KI KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+R+F IRRNEK
Sbjct: 15  GRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74

Query: 181 ISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYG 360
           I+V+ TVRG KAEEILEKGLKV EYEL K  FS  GNFGFG+ EHIDLG+KYDP IGIYG
Sbjct: 75  IAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYG 134

Query: 361 MDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 504
           MDFYVVL+R G RV+ RR+   RIG  HR+ KEE  KWFQQ YDGI+L
Sbjct: 135 MDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>sp|P42922|RL11_LEICH 60S ribosomal protein L11
          Length = 188

 Score =  244 bits (624), Expect = 8e-65
 Identities = 117/165 (70%), Positives = 139/165 (84%)
 Frame = +1

Query: 7   NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
           NPMR+I + KLC+NICVGESGDRLTRA KVLEQL  Q PV S+ARLT+R+F IRRNEKI+
Sbjct: 9   NPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIA 68

Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
           V+ TVRGKKAEE+LEKGLKV E+ELK   FS  G+FGFGI EHIDLG+KYDPS GIYGMD
Sbjct: 69  VHCTVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTGIYGMD 128

Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 501
           FYVVL R G RVA+R+++ SR+G  H +TKEEA KWF++ +DGI+
Sbjct: 129 FYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
          Length = 188

 Score =  243 bits (621), Expect = 2e-64
 Identities = 116/165 (70%), Positives = 139/165 (84%)
 Frame = +1

Query: 7   NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
           NPMR+I + KLC+NICVGESGDRLTRA KVLEQL  Q PV S+ARLT+R+F IRRNEKI+
Sbjct: 9   NPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIA 68

Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
           V+ TVRGKKAEE+LEKGLKV E+ELK   F+  G+FGFGI EHIDLG+KYDPS GIYGMD
Sbjct: 69  VHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIKYDPSTGIYGMD 128

Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 501
           FYVVL R G RVA+R+++ SR+G  H +TKEEA KWF++ +DGI+
Sbjct: 129 FYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
          Length = 182

 Score =  243 bits (619), Expect = 3e-64
 Identities = 118/168 (70%), Positives = 138/168 (82%)
 Frame = +1

Query: 7   NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
           NPMR IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNEKI+
Sbjct: 9   NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68

Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
            Y TVRG+KA ++LE GLKV EYEL +  FS  G FGFGI EHIDLG+KYDPS GIYGMD
Sbjct: 69  CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128

Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 510
           FYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ  Y+G++LNK
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
          Length = 182

 Score =  243 bits (619), Expect = 3e-64
 Identities = 118/168 (70%), Positives = 138/168 (82%)
 Frame = +1

Query: 7   NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
           NPMR IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNEKI+
Sbjct: 9   NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68

Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
            Y TVRG+KA ++LE GLKV EYEL +  FS  G FGFGI EHIDLG+KYDPS GIYGMD
Sbjct: 69  CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128

Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 510
           FYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ  Y+G++LNK
Sbjct: 129 FYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
          Length = 181

 Score =  239 bits (611), Expect = 3e-63
 Identities = 116/168 (69%), Positives = 137/168 (81%)
 Frame = +1

Query: 7   NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
           NPMR+IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNEKI+
Sbjct: 9   NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68

Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
            Y TVRG KA ++LE GLKV EYEL +  FS  G FGFGI EHIDLG+KYDPS GIYGMD
Sbjct: 69  CYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128

Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 510
           F+VVL R G RV  RR+ K+R+G +HR+TK++A KWFQ  Y+G++LNK
Sbjct: 129 FFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,612,739
Number of Sequences: 369166
Number of extensions: 994956
Number of successful extensions: 3446
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3385
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)