Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_M15
(554 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 259 4e-69
sp|P46222|RL11_DROME 60S ribosomal protein L11 258 5e-69
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 258 7e-69
sp|Q29205|RL11_PIG 60S ribosomal protein L11 257 2e-68
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 253 2e-67
sp|P42922|RL11_LEICH 60S ribosomal protein L11 244 8e-65
sp|P48157|RL11_LEIMA 60S ribosomal protein L11 243 2e-64
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 243 3e-64
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 243 3e-64
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5) 239 3e-63
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 259 bits (661), Expect = 4e-69
Identities = 125/166 (75%), Positives = 144/166 (86%)
Frame = +1
Query: 7 NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
NPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI+
Sbjct: 10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIA 69
Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+D
Sbjct: 70 VHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLD 129
Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 504
FYVVL R G +A ++++ IGAKHRI+KEEA +WFQQ YDGI+L
Sbjct: 130 FYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 258 bits (660), Expect = 5e-69
Identities = 123/167 (73%), Positives = 142/167 (85%)
Frame = +1
Query: 7 NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
NPMR + I KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKAR T+RSF IRRNEKI+
Sbjct: 15 NPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 74
Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
V+ TVRG KAEEILE+GLKV EYEL++ FS GNFGFGI EHIDLG+KYDPSIGIYG+D
Sbjct: 75 VHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLD 134
Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLN 507
FYVVL R G V +R+++ +G +HR+TKE+A KWFQQ YDGI+LN
Sbjct: 135 FYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 258 bits (659), Expect = 7e-69
Identities = 123/166 (74%), Positives = 143/166 (86%)
Frame = +1
Query: 7 NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
NPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI+
Sbjct: 10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIA 69
Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+D
Sbjct: 70 VHCTVRGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGLD 129
Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 504
FYVVL R G +A +++++ RIG KHRI K EA +WFQQ YDG++L
Sbjct: 130 FYVVLGRPGFSIADKKRKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175
>sp|Q29205|RL11_PIG 60S ribosomal protein L11
Length = 178
Score = 257 bits (656), Expect = 2e-68
Identities = 124/166 (74%), Positives = 144/166 (86%)
Frame = +1
Query: 7 NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
NPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI+
Sbjct: 10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIA 69
Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+D
Sbjct: 70 VHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLD 129
Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 504
FYVVL R G +A ++++ IGAKHRI+KEEA +WFQQ +DGI+L
Sbjct: 130 FYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 253 bits (646), Expect = 2e-67
Identities = 125/168 (74%), Positives = 139/168 (82%)
Frame = +1
Query: 1 G*NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEK 180
G N MR++KI KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+R+F IRRNEK
Sbjct: 15 GRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74
Query: 181 ISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYG 360
I+V+ TVRG KAEEILEKGLKV EYEL K FS GNFGFG+ EHIDLG+KYDP IGIYG
Sbjct: 75 IAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYG 134
Query: 361 MDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 504
MDFYVVL+R G RV+ RR+ RIG HR+ KEE KWFQQ YDGI+L
Sbjct: 135 MDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>sp|P42922|RL11_LEICH 60S ribosomal protein L11
Length = 188
Score = 244 bits (624), Expect = 8e-65
Identities = 117/165 (70%), Positives = 139/165 (84%)
Frame = +1
Query: 7 NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
NPMR+I + KLC+NICVGESGDRLTRA KVLEQL Q PV S+ARLT+R+F IRRNEKI+
Sbjct: 9 NPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIA 68
Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
V+ TVRGKKAEE+LEKGLKV E+ELK FS G+FGFGI EHIDLG+KYDPS GIYGMD
Sbjct: 69 VHCTVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTGIYGMD 128
Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 501
FYVVL R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 129 FYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
Length = 188
Score = 243 bits (621), Expect = 2e-64
Identities = 116/165 (70%), Positives = 139/165 (84%)
Frame = +1
Query: 7 NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
NPMR+I + KLC+NICVGESGDRLTRA KVLEQL Q PV S+ARLT+R+F IRRNEKI+
Sbjct: 9 NPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIA 68
Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
V+ TVRGKKAEE+LEKGLKV E+ELK F+ G+FGFGI EHIDLG+KYDPS GIYGMD
Sbjct: 69 VHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIKYDPSTGIYGMD 128
Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 501
FYVVL R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 129 FYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 243 bits (619), Expect = 3e-64
Identities = 118/168 (70%), Positives = 138/168 (82%)
Frame = +1
Query: 7 NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
NPMR IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNEKI+
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
Y TVRG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMD
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 510
FYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 243 bits (619), Expect = 3e-64
Identities = 118/168 (70%), Positives = 138/168 (82%)
Frame = +1
Query: 7 NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
NPMR IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNEKI+
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
Y TVRG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMD
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 510
FYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 129 FYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
Length = 181
Score = 239 bits (611), Expect = 3e-63
Identities = 116/168 (69%), Positives = 137/168 (81%)
Frame = +1
Query: 7 NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 186
NPMR+IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNEKI+
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 187 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 366
Y TVRG KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMD
Sbjct: 69 CYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 367 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 510
F+VVL R G RV RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 129 FFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,612,739
Number of Sequences: 369166
Number of extensions: 994956
Number of successful extensions: 3446
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3385
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)