Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_O15
(120 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 45 7e-05
sp|P46222|RL11_DROME 60S ribosomal protein L11 45 7e-05
sp|P50881|RL11_CHLRE 60S ribosomal protein L11 44 1e-04
sp|Q29205|RL11_PIG 60S ribosomal protein L11 43 3e-04
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5) 41 8e-04
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 41 8e-04
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 41 8e-04
sp|O22540|RL11_ORYSA 60S ribosomal protein L11 41 0.001
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 40 0.002
sp|Q962U2|RL11_SPOFR 60S ribosomal protein L11 39 0.003
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 44.7 bits (104), Expect = 7e-05
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +2
Query: 2 AKHRITKEEAQKWFQQNYDGILL 70
AKHRI+KEEA +WFQQ YDGI+L
Sbjct: 153 AKHRISKEEAMRWFQQKYDGIIL 175
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 44.7 bits (104), Expect = 7e-05
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = +2
Query: 5 KHRITKEEAQKWFQQNYDGILLN 73
+HR+TKE+A KWFQQ YDGI+LN
Sbjct: 159 QHRLTKEDAMKWFQQKYDGIILN 181
>sp|P50881|RL11_CHLRE 60S ribosomal protein L11
Length = 170
Score = 43.9 bits (102), Expect = 1e-04
Identities = 16/24 (66%), Positives = 22/24 (91%)
Frame = +2
Query: 5 KHRITKEEAQKWFQQNYDGILLNK 76
KH++TKE+A KWFQQ +DG++LNK
Sbjct: 143 KHKVTKEDAIKWFQQEFDGVVLNK 166
>sp|Q29205|RL11_PIG 60S ribosomal protein L11
Length = 178
Score = 42.7 bits (99), Expect = 3e-04
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = +2
Query: 2 AKHRITKEEAQKWFQQNYDGILL 70
AKHRI+KEEA +WFQQ +DGI+L
Sbjct: 153 AKHRISKEEAMRWFQQKHDGIIL 175
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
Length = 181
Score = 41.2 bits (95), Expect = 8e-04
Identities = 14/24 (58%), Positives = 21/24 (87%)
Frame = +2
Query: 5 KHRITKEEAQKWFQQNYDGILLNK 76
+HR+TK++A KWFQ Y+G++LNK
Sbjct: 153 QHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 41.2 bits (95), Expect = 8e-04
Identities = 14/24 (58%), Positives = 21/24 (87%)
Frame = +2
Query: 5 KHRITKEEAQKWFQQNYDGILLNK 76
+HR+TK++A KWFQ Y+G++LNK
Sbjct: 153 QHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 41.2 bits (95), Expect = 8e-04
Identities = 14/24 (58%), Positives = 21/24 (87%)
Frame = +2
Query: 5 KHRITKEEAQKWFQQNYDGILLNK 76
+HR+TK++A KWFQ Y+G++LNK
Sbjct: 153 QHRVTKDDAMKWFQVKYEGVILNK 176
>sp|O22540|RL11_ORYSA 60S ribosomal protein L11
Length = 182
Score = 40.8 bits (94), Expect = 0.001
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 5 KHRITKEEAQKWFQQNYDGILLNK 76
+HR+TKE+A KWFQ Y+G++ NK
Sbjct: 153 QHRVTKEDAMKWFQVKYEGVIFNK 176
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 40.0 bits (92), Expect = 0.002
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +2
Query: 5 KHRITKEEAQKWFQQNYDGILL 70
KHRI K EA +WFQQ YDG++L
Sbjct: 154 KHRIRKREAMRWFQQKYDGVIL 175
>sp|Q962U2|RL11_SPOFR 60S ribosomal protein L11
Length = 195
Score = 39.3 bits (90), Expect = 0.003
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 14 ITKEEAQKWFQQNYDGILLN 73
+TKE+A KWFQQ YDGI+LN
Sbjct: 173 LTKEDAMKWFQQKYDGIILN 192
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,143,123
Number of Sequences: 369166
Number of extensions: 80355
Number of successful extensions: 293
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 68,354,980
effective HSP length: 13
effective length of database: 65,953,425
effective search space used: 1714789050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)