Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_C22
(406 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 180 1e-45
sp|P46222|RL11_DROME 60S ribosomal protein L11 179 2e-45
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 179 2e-45
sp|Q29205|RL11_PIG 60S ribosomal protein L11 178 4e-45
sp|P50881|RL11_CHLRE 60S ribosomal protein L11 176 2e-44
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 176 2e-44
sp|P42922|RL11_LEICH 60S ribosomal protein L11 173 1e-43
sp|P48157|RL11_LEIMA 60S ribosomal protein L11 172 2e-43
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 172 2e-43
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 172 2e-43
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 180 bits (456), Expect = 1e-45
Identities = 86/119 (72%), Positives = 101/119 (84%)
Frame = +3
Query: 3 IRSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLG 182
+RSF IRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG
Sbjct: 57 VRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLG 116
Query: 183 LKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 359
+KYDPSIGIYG+DFYVVL R G +A ++++ IGAKHRI+KEEA +WFQQ YDGI+L
Sbjct: 117 IKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 179 bits (454), Expect = 2e-45
Identities = 83/120 (69%), Positives = 100/120 (83%)
Frame = +3
Query: 3 IRSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLG 182
+RSF IRRNEKI+V+ TVRG KAEEILE+GLKV EYEL++ FS GNFGFGI EHIDLG
Sbjct: 62 VRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLG 121
Query: 183 LKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLN 362
+KYDPSIGIYG+DFYVVL R G V +R+++ +G +HR+TKE+A KWFQQ YDGI+LN
Sbjct: 122 IKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 179 bits (454), Expect = 2e-45
Identities = 84/119 (70%), Positives = 100/119 (84%)
Frame = +3
Query: 3 IRSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLG 182
+RSF IRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG
Sbjct: 57 VRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLG 116
Query: 183 LKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 359
+KYDPSIGIYG+DFYVVL R G +A +++++ RIG KHRI K EA +WFQQ YDG++L
Sbjct: 117 IKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175
>sp|Q29205|RL11_PIG 60S ribosomal protein L11
Length = 178
Score = 178 bits (451), Expect = 4e-45
Identities = 85/119 (71%), Positives = 101/119 (84%)
Frame = +3
Query: 3 IRSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLG 182
+RSF IRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG
Sbjct: 57 VRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLG 116
Query: 183 LKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 359
+KYDPSIGIYG+DFYVVL R G +A ++++ IGAKHRI+KEEA +WFQQ +DGI+L
Sbjct: 117 IKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175
>sp|P50881|RL11_CHLRE 60S ribosomal protein L11
Length = 170
Score = 176 bits (445), Expect = 2e-44
Identities = 82/121 (67%), Positives = 100/121 (82%)
Frame = +3
Query: 3 IRSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLG 182
+RSFAIRRNEKIS Y TVRG+KA +++++GL V E+EL + FS GNFGFGI EHIDLG
Sbjct: 46 VRSFAIRRNEKISCYVTVRGEKAYDLVKRGLAVKEFELIRKNFSDTGNFGFGIQEHIDLG 105
Query: 183 LKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLN 362
LKYDPS GIYGMDFYV L R G RVA RR+QK+ +G KH++TKE+A KWFQQ +DG++LN
Sbjct: 106 LKYDPSTGIYGMDFYVCLERRGYRVARRRKQKAHVGVKHKVTKEDAIKWFQQEFDGVVLN 165
Query: 363 K 365
K
Sbjct: 166 K 166
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 176 bits (445), Expect = 2e-44
Identities = 85/119 (71%), Positives = 96/119 (80%)
Frame = +3
Query: 3 IRSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLG 182
+R+F IRRNEKI+V+ TVRG KAEEILEKGLKV EYEL K FS GNFGFG+ EHIDLG
Sbjct: 64 VRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLG 123
Query: 183 LKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 359
+KYDP IGIYGMDFYVVL+R G RV+ RR+ RIG HR+ KEE KWFQQ YDGI+L
Sbjct: 124 IKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>sp|P42922|RL11_LEICH 60S ribosomal protein L11
Length = 188
Score = 173 bits (439), Expect = 1e-43
Identities = 81/118 (68%), Positives = 99/118 (83%)
Frame = +3
Query: 3 IRSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLG 182
+R+F IRRNEKI+V+ TVRGKKAEE+LEKGLKV E+ELK FS G+FGFGI EHIDLG
Sbjct: 56 VRTFGIRRNEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLG 115
Query: 183 LKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 356
+KYDPS GIYGMDFYVVL R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 116 IKYDPSTGIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
Length = 188
Score = 172 bits (436), Expect = 2e-43
Identities = 80/118 (67%), Positives = 99/118 (83%)
Frame = +3
Query: 3 IRSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLG 182
+R+F IRRNEKI+V+ TVRGKKAEE+LEKGLKV E+ELK F+ G+FGFGI EHIDLG
Sbjct: 56 VRTFGIRRNEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLG 115
Query: 183 LKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 356
+KYDPS GIYGMDFYVVL R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 116 IKYDPSTGIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 172 bits (436), Expect = 2e-43
Identities = 81/121 (66%), Positives = 98/121 (80%)
Frame = +3
Query: 3 IRSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLG 182
+RSF IRRNEKI+ Y TVRG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG
Sbjct: 56 VRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLG 115
Query: 183 LKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLN 362
+KYDPS GIYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LN
Sbjct: 116 IKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILN 175
Query: 363 K 365
K
Sbjct: 176 K 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 172 bits (436), Expect = 2e-43
Identities = 81/121 (66%), Positives = 98/121 (80%)
Frame = +3
Query: 3 IRSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLG 182
+RSF IRRNEKI+ Y TVRG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG
Sbjct: 56 VRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLG 115
Query: 183 LKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLN 362
+KYDPS GIYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LN
Sbjct: 116 IKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILN 175
Query: 363 K 365
K
Sbjct: 176 K 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,119,462
Number of Sequences: 369166
Number of extensions: 704936
Number of successful extensions: 2529
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2495
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)