Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_E22
(294 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50881|RL11_CHLRE 60S ribosomal protein L11 127 8e-30
sp|P46222|RL11_DROME 60S ribosomal protein L11 123 1e-28
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 122 2e-28
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 122 3e-28
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 120 7e-28
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 120 7e-28
sp|Q29205|RL11_PIG 60S ribosomal protein L11 120 7e-28
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 119 2e-27
sp|O22540|RL11_ORYSA 60S ribosomal protein L11 119 3e-27
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5) 117 6e-27
>sp|P50881|RL11_CHLRE 60S ribosomal protein L11
Length = 170
Score = 127 bits (319), Expect = 8e-30
Identities = 57/79 (72%), Positives = 66/79 (83%)
Frame = +2
Query: 17 FSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRIT 196
FS GNFGFGI EHIDLGLKYDPS GIYGMDFYV L R G RVA RR+QK+ +G KH++T
Sbjct: 88 FSDTGNFGFGIQEHIDLGLKYDPSTGIYGMDFYVCLERRGYRVARRRKQKAHVGVKHKVT 147
Query: 197 KEEAQKWFQQNYDGILLNK 253
KE+A KWFQQ +DG++LNK
Sbjct: 148 KEDAIKWFQQEFDGVVLNK 166
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 123 bits (308), Expect = 1e-28
Identities = 54/83 (65%), Positives = 67/83 (80%)
Frame = +2
Query: 2 LKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGA 181
L++ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G V +R+++ +G
Sbjct: 99 LRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGF 158
Query: 182 KHRITKEEAQKWFQQNYDGILLN 250
+HR+TKE+A KWFQQ YDGI+LN
Sbjct: 159 QHRLTKEDAMKWFQQKYDGIILN 181
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 122 bits (307), Expect = 2e-28
Identities = 56/82 (68%), Positives = 68/82 (82%)
Frame = +2
Query: 2 LKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGA 181
L+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G +A ++++ IGA
Sbjct: 94 LRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGA 153
Query: 182 KHRITKEEAQKWFQQNYDGILL 247
KHRI+KEEA +WFQQ YDGI+L
Sbjct: 154 KHRISKEEAMRWFQQKYDGIIL 175
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 122 bits (305), Expect = 3e-28
Identities = 54/82 (65%), Positives = 67/82 (81%)
Frame = +2
Query: 2 LKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGA 181
L+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G +A +++++ RIG
Sbjct: 94 LRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGRIGF 153
Query: 182 KHRITKEEAQKWFQQNYDGILL 247
KHRI K EA +WFQQ YDG++L
Sbjct: 154 KHRIRKREAMRWFQQKYDGVIL 175
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 120 bits (302), Expect = 7e-28
Identities = 54/79 (68%), Positives = 65/79 (82%)
Frame = +2
Query: 17 FSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRIT 196
FS G FGFGI EHIDLG+KYDPS GIYGMDFYVVL R G RVA RR+ K+R+G +HR+T
Sbjct: 98 FSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVT 157
Query: 197 KEEAQKWFQQNYDGILLNK 253
K++A KWFQ Y+G++LNK
Sbjct: 158 KDDAMKWFQVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 120 bits (302), Expect = 7e-28
Identities = 54/79 (68%), Positives = 65/79 (82%)
Frame = +2
Query: 17 FSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRIT 196
FS G FGFGI EHIDLG+KYDPS GIYGMDFYVVL R G RVA RR+ K+R+G +HR+T
Sbjct: 98 FSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVT 157
Query: 197 KEEAQKWFQQNYDGILLNK 253
K++A KWFQ Y+G++LNK
Sbjct: 158 KDDAMKWFQVKYEGVILNK 176
>sp|Q29205|RL11_PIG 60S ribosomal protein L11
Length = 178
Score = 120 bits (302), Expect = 7e-28
Identities = 55/82 (67%), Positives = 68/82 (82%)
Frame = +2
Query: 2 LKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGA 181
L+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G +A ++++ IGA
Sbjct: 94 LRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGA 153
Query: 182 KHRITKEEAQKWFQQNYDGILL 247
KHRI+KEEA +WFQQ +DGI+L
Sbjct: 154 KHRISKEEAMRWFQQKHDGIIL 175
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 119 bits (299), Expect = 2e-27
Identities = 56/82 (68%), Positives = 63/82 (76%)
Frame = +2
Query: 2 LKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGA 181
L K FS GNFGFG+ EHIDLG+KYDP IGIYGMDFYVVL+R G RV+ RR+ RIG
Sbjct: 101 LFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGP 160
Query: 182 KHRITKEEAQKWFQQNYDGILL 247
HR+ KEE KWFQQ YDGI+L
Sbjct: 161 SHRVDKEETIKWFQQKYDGIIL 182
>sp|O22540|RL11_ORYSA 60S ribosomal protein L11
Length = 182
Score = 119 bits (297), Expect = 3e-27
Identities = 55/84 (65%), Positives = 68/84 (80%)
Frame = +2
Query: 2 LKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGA 181
L++SC S+ G FGFGI EHIDLG++ DPS G YGMDFYVVL RAG RVA RR+ KSR+G
Sbjct: 94 LRRSC-SETGCFGFGIQEHIDLGIQCDPSTGFYGMDFYVVLERAGYRVARRRRCKSRVGI 152
Query: 182 KHRITKEEAQKWFQQNYDGILLNK 253
+HR+TKE+A KWFQ Y+G++ NK
Sbjct: 153 QHRVTKEDAMKWFQVKYEGVIFNK 176
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
Length = 181
Score = 117 bits (294), Expect = 6e-27
Identities = 52/79 (65%), Positives = 64/79 (81%)
Frame = +2
Query: 17 FSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRIT 196
FS G FGFGI EHIDLG+KYDPS GIYGMDF+VVL R G RV RR+ K+R+G +HR+T
Sbjct: 98 FSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVT 157
Query: 197 KEEAQKWFQQNYDGILLNK 253
K++A KWFQ Y+G++LNK
Sbjct: 158 KDDAMKWFQVKYEGVILNK 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,503,051
Number of Sequences: 369166
Number of extensions: 473256
Number of successful extensions: 1572
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 68,354,980
effective HSP length: 67
effective length of database: 55,977,735
effective search space used: 1679332050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)