Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_C15
(208 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50881|RL11_CHLRE 60S ribosomal protein L11 80 1e-15
sp|O22540|RL11_ORYSA 60S ribosomal protein L11 79 2e-15
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 78 6e-15
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 78 6e-15
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5) 75 5e-14
sp|P46222|RL11_DROME 60S ribosomal protein L11 73 2e-13
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 72 3e-13
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 72 3e-13
sp|P48157|RL11_LEIMA 60S ribosomal protein L11 72 5e-13
sp|P42922|RL11_LEICH 60S ribosomal protein L11 72 5e-13
>sp|P50881|RL11_CHLRE 60S ribosomal protein L11
Length = 170
Score = 80.5 bits (197), Expect = 1e-15
Identities = 35/54 (64%), Positives = 44/54 (81%)
Frame = +3
Query: 3 GIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQ*WFQQNYDGILLNK 164
GIYGMDFYV L R G RVA RR+QK+ +G KH++TKE+A WFQQ +DG++LNK
Sbjct: 113 GIYGMDFYVCLERRGYRVARRRKQKAHVGVKHKVTKEDAIKWFQQEFDGVVLNK 166
>sp|O22540|RL11_ORYSA 60S ribosomal protein L11
Length = 182
Score = 79.3 bits (194), Expect = 2e-15
Identities = 35/54 (64%), Positives = 43/54 (79%)
Frame = +3
Query: 3 GIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQ*WFQQNYDGILLNK 164
G YGMDFYVVL RAG RVA RR+ KSR+G +HR+TKE+A WFQ Y+G++ NK
Sbjct: 123 GFYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVIFNK 176
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 78.2 bits (191), Expect = 6e-15
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = +3
Query: 3 GIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQ*WFQQNYDGILLNK 164
GIYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A WFQ Y+G++LNK
Sbjct: 123 GIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 78.2 bits (191), Expect = 6e-15
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = +3
Query: 3 GIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQ*WFQQNYDGILLNK 164
GIYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A WFQ Y+G++LNK
Sbjct: 123 GIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
Length = 181
Score = 75.1 bits (183), Expect = 5e-14
Identities = 32/54 (59%), Positives = 43/54 (79%)
Frame = +3
Query: 3 GIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQ*WFQQNYDGILLNK 164
GIYGMDF+VVL R G RV RR+ K+R+G +HR+TK++A WFQ Y+G++LNK
Sbjct: 123 GIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 73.2 bits (178), Expect = 2e-13
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +3
Query: 3 GIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQ*WFQQNYDGILLN 161
GIYG+DFYVVL R G V +R+++ +G +HR+TKE+A WFQQ YDGI+LN
Sbjct: 129 GIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 72.4 bits (176), Expect = 3e-13
Identities = 33/52 (63%), Positives = 41/52 (78%)
Frame = +3
Query: 3 GIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQ*WFQQNYDGILL 158
GIYG+DFYVVL R G +A ++++ IGAKHRI+KEEA WFQQ YDGI+L
Sbjct: 124 GIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 72.4 bits (176), Expect = 3e-13
Identities = 34/52 (65%), Positives = 39/52 (75%)
Frame = +3
Query: 3 GIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQ*WFQQNYDGILL 158
GIYGMDFYVVL+R G RV+ RR+ RIG HR+ KEE WFQQ YDGI+L
Sbjct: 131 GIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
Length = 188
Score = 71.6 bits (174), Expect = 5e-13
Identities = 31/51 (60%), Positives = 41/51 (80%)
Frame = +3
Query: 3 GIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQ*WFQQNYDGIL 155
GIYGMDFYVVL R G RVA+R+++ SR+G H +TKEEA WF++ +DGI+
Sbjct: 123 GIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P42922|RL11_LEICH 60S ribosomal protein L11
Length = 188
Score = 71.6 bits (174), Expect = 5e-13
Identities = 31/51 (60%), Positives = 41/51 (80%)
Frame = +3
Query: 3 GIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQ*WFQQNYDGIL 155
GIYGMDFYVVL R G RVA+R+++ SR+G H +TKEEA WF++ +DGI+
Sbjct: 123 GIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,700,424
Number of Sequences: 369166
Number of extensions: 202780
Number of successful extensions: 717
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 68,354,980
effective HSP length: 40
effective length of database: 60,965,580
effective search space used: 1707036240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)