Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_N17
(240 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10157|RL11_SCHPO 60S ribosomal protein L11 121 4e-28
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 120 7e-28
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 118 4e-27
sp|Q29205|RL11_PIG 60S ribosomal protein L11 118 4e-27
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 118 5e-27
sp|P42922|RL11_LEICH 60S ribosomal protein L11 115 2e-26
sp|P48157|RL11_LEIMA 60S ribosomal protein L11 114 5e-26
sp|P46222|RL11_DROME 60S ribosomal protein L11 114 5e-26
sp|Q758S7|RL11_ASHGO 60S ribosomal protein L11 113 2e-25
sp|Q6FTK4|RL11_CANGA 60S ribosomal protein L11 111 5e-25
>sp|Q10157|RL11_SCHPO 60S ribosomal protein L11
Length = 174
Score = 121 bits (304), Expect = 4e-28
Identities = 58/79 (73%), Positives = 65/79 (82%)
Frame = +2
Query: 2 KAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 181
KAEEILE+GLKV EYELKK FS GNFGFGI EHIDLG+KYDPSIGIYGMDFYVV+ R
Sbjct: 75 KAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRP 134
Query: 182 GRRVAYRRQQKSRIGAKHR 238
G RVA R+ Q+ R+G H+
Sbjct: 135 GMRVARRKAQRGRVGYTHK 153
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 120 bits (302), Expect = 7e-28
Identities = 57/79 (72%), Positives = 67/79 (84%)
Frame = +2
Query: 2 KAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 181
KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R
Sbjct: 78 KAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 137
Query: 182 GRRVAYRRQQKSRIGAKHR 238
G +A +++++ RIG KHR
Sbjct: 138 GFSIADKKRKRGRIGFKHR 156
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 118 bits (296), Expect = 4e-27
Identities = 57/79 (72%), Positives = 66/79 (83%)
Frame = +2
Query: 2 KAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 181
KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R
Sbjct: 78 KAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 137
Query: 182 GRRVAYRRQQKSRIGAKHR 238
G +A ++++ IGAKHR
Sbjct: 138 GFSIADKKRRTGCIGAKHR 156
>sp|Q29205|RL11_PIG 60S ribosomal protein L11
Length = 178
Score = 118 bits (296), Expect = 4e-27
Identities = 57/79 (72%), Positives = 66/79 (83%)
Frame = +2
Query: 2 KAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 181
KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R
Sbjct: 78 KAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 137
Query: 182 GRRVAYRRQQKSRIGAKHR 238
G +A ++++ IGAKHR
Sbjct: 138 GFSIADKKRRTGCIGAKHR 156
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 118 bits (295), Expect = 5e-27
Identities = 58/79 (73%), Positives = 63/79 (79%)
Frame = +2
Query: 2 KAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 181
KAEEILEKGLKV EYEL K FS GNFGFG+ EHIDLG+KYDP IGIYGMDFYVVL+R
Sbjct: 85 KAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRN 144
Query: 182 GRRVAYRRQQKSRIGAKHR 238
G RV+ RR+ RIG HR
Sbjct: 145 GVRVSKRRRAPGRIGPSHR 163
>sp|P42922|RL11_LEICH 60S ribosomal protein L11
Length = 188
Score = 115 bits (289), Expect = 2e-26
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = +2
Query: 2 KAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 181
KAEE+LEKGLKV E+ELK FS G+FGFGI EHIDLG+KYDPS GIYGMDFYVVL R
Sbjct: 77 KAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVLGRR 136
Query: 182 GRRVAYRRQQKSRIGAKH 235
G RVA+R+++ SR+G H
Sbjct: 137 GERVAHRKRKCSRVGHSH 154
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
Length = 188
Score = 114 bits (286), Expect = 5e-26
Identities = 54/78 (69%), Positives = 64/78 (82%)
Frame = +2
Query: 2 KAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 181
KAEE+LEKGLKV E+ELK F+ G+FGFGI EHIDLG+KYDPS GIYGMDFYVVL R
Sbjct: 77 KAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVLGRR 136
Query: 182 GRRVAYRRQQKSRIGAKH 235
G RVA+R+++ SR+G H
Sbjct: 137 GERVAHRKRKCSRVGHSH 154
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 114 bits (286), Expect = 5e-26
Identities = 53/79 (67%), Positives = 64/79 (81%)
Frame = +2
Query: 2 KAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 181
KAEEILE+GLKV EYEL++ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R
Sbjct: 83 KAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 142
Query: 182 GRRVAYRRQQKSRIGAKHR 238
G V +R+++ +G +HR
Sbjct: 143 GYNVNHRKRKSGTVGFQHR 161
>sp|Q758S7|RL11_ASHGO 60S ribosomal protein L11
Length = 174
Score = 113 bits (282), Expect = 2e-25
Identities = 52/79 (65%), Positives = 65/79 (82%)
Frame = +2
Query: 2 KAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 181
K+EEILE+GLKV EY+L+ FS+ GNFGFGI EHIDLG+KYDPSIGIYGMDFYVV+ R
Sbjct: 75 KSEEILERGLKVKEYQLRTKNFSETGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMGRP 134
Query: 182 GRRVAYRRQQKSRIGAKHR 238
G RV+ R++ +S +G H+
Sbjct: 135 GGRVSRRKRCRSTVGNSHK 153
>sp|Q6FTK4|RL11_CANGA 60S ribosomal protein L11
Length = 174
Score = 111 bits (278), Expect = 5e-25
Identities = 50/79 (63%), Positives = 64/79 (81%)
Frame = +2
Query: 2 KAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 181
KAEEILE+GLKV EY+L+ FS GNFGFGI EHIDLG+KYDPSIGI+GMDFY+V+ R
Sbjct: 75 KAEEILERGLKVKEYQLRNRNFSTTGNFGFGIQEHIDLGIKYDPSIGIFGMDFYIVMGRP 134
Query: 182 GRRVAYRRQQKSRIGAKHR 238
G R+A R++ ++ +G H+
Sbjct: 135 GNRIARRKRCRATVGNSHK 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,052,533
Number of Sequences: 369166
Number of extensions: 480254
Number of successful extensions: 1610
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 68,354,980
effective HSP length: 50
effective length of database: 59,118,230
effective search space used: 1714428670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)