Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_K17
(344 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 148 3e-36
sp|P46222|RL11_DROME 60S ribosomal protein L11 147 6e-36
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 147 6e-36
sp|Q29205|RL11_PIG 60S ribosomal protein L11 146 1e-35
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 145 3e-35
sp|Q10157|RL11_SCHPO 60S ribosomal protein L11 141 4e-34
sp|P50881|RL11_CHLRE 60S ribosomal protein L11 140 7e-34
sp|P42922|RL11_LEICH 60S ribosomal protein L11 140 7e-34
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 140 1e-33
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 140 1e-33
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 148 bits (374), Expect = 3e-36
Identities = 70/98 (71%), Positives = 83/98 (84%)
Frame = +1
Query: 1 EAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 180
+AEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R
Sbjct: 78 KAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 137
Query: 181 GRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 294
G +A ++++ IGAKHRI+KEEA +WFQQ YDGI+L
Sbjct: 138 GFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 147 bits (372), Expect = 6e-36
Identities = 67/99 (67%), Positives = 82/99 (82%)
Frame = +1
Query: 1 EAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 180
+AEEILE+GLKV EYEL++ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R
Sbjct: 83 KAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 142
Query: 181 GRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLN 297
G V +R+++ +G +HR+TKE+A KWFQQ YDGI+LN
Sbjct: 143 GYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 147 bits (372), Expect = 6e-36
Identities = 68/98 (69%), Positives = 82/98 (83%)
Frame = +1
Query: 1 EAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 180
+AEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R
Sbjct: 78 KAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 137
Query: 181 GRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 294
G +A +++++ RIG KHRI K EA +WFQQ YDG++L
Sbjct: 138 GFSIADKKRKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175
>sp|Q29205|RL11_PIG 60S ribosomal protein L11
Length = 178
Score = 146 bits (369), Expect = 1e-35
Identities = 69/98 (70%), Positives = 83/98 (84%)
Frame = +1
Query: 1 EAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 180
+AEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R
Sbjct: 78 KAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 137
Query: 181 GRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 294
G +A ++++ IGAKHRI+KEEA +WFQQ +DGI+L
Sbjct: 138 GFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 145 bits (366), Expect = 3e-35
Identities = 70/98 (71%), Positives = 78/98 (79%)
Frame = +1
Query: 1 EAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 180
+AEEILEKGLKV EYEL K FS GNFGFG+ EHIDLG+KYDP IGIYGMDFYVVL+R
Sbjct: 85 KAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRN 144
Query: 181 GRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 294
G RV+ RR+ RIG HR+ KEE KWFQQ YDGI+L
Sbjct: 145 GVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>sp|Q10157|RL11_SCHPO 60S ribosomal protein L11
Length = 174
Score = 141 bits (356), Expect = 4e-34
Identities = 66/100 (66%), Positives = 78/100 (78%)
Frame = +1
Query: 1 EAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 180
+AEEILE+GLKV EYELKK FS GNFGFGI EHIDLG+KYDPSIGIYGMDFYVV+ R
Sbjct: 75 KAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRP 134
Query: 181 GRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 300
G RVA R+ Q+ R+G H+I E+ WF+Q YD ++L K
Sbjct: 135 GMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVLGK 174
>sp|P50881|RL11_CHLRE 60S ribosomal protein L11
Length = 170
Score = 140 bits (354), Expect = 7e-34
Identities = 64/100 (64%), Positives = 81/100 (81%)
Frame = +1
Query: 1 EAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 180
+A +++++GL V E+EL + FS GNFGFGI EHIDLGLKYDPS GIYGMDFYV L R
Sbjct: 67 KAYDLVKRGLAVKEFELIRKNFSDTGNFGFGIQEHIDLGLKYDPSTGIYGMDFYVCLERR 126
Query: 181 GRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 300
G RVA RR+QK+ +G KH++TKE+A KWFQQ +DG++LNK
Sbjct: 127 GYRVARRRKQKAHVGVKHKVTKEDAIKWFQQEFDGVVLNK 166
>sp|P42922|RL11_LEICH 60S ribosomal protein L11
Length = 188
Score = 140 bits (354), Expect = 7e-34
Identities = 65/97 (67%), Positives = 80/97 (82%)
Frame = +1
Query: 1 EAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 180
+AEE+LEKGLKV E+ELK FS G+FGFGI EHIDLG+KYDPS GIYGMDFYVVL R
Sbjct: 77 KAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVLGRR 136
Query: 181 GRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 291
G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 137 GERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 140 bits (352), Expect = 1e-33
Identities = 65/100 (65%), Positives = 80/100 (80%)
Frame = +1
Query: 1 EAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 180
+A ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMDFYVVL R
Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERP 136
Query: 181 GRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 300
G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 137 GYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 140 bits (352), Expect = 1e-33
Identities = 65/100 (65%), Positives = 80/100 (80%)
Frame = +1
Query: 1 EAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRA 180
+A ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMDFYVVL R
Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERP 136
Query: 181 GRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 300
G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 137 GYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,441,038
Number of Sequences: 369166
Number of extensions: 627778
Number of successful extensions: 2015
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1987
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)