Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_H20
(561 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 262 5e-70
sp|Q29205|RL11_PIG 60S ribosomal protein L11 260 2e-69
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 260 2e-69
sp|P46222|RL11_DROME 60S ribosomal protein L11 259 4e-69
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 252 4e-67
sp|P42922|RL11_LEICH 60S ribosomal protein L11 245 6e-65
sp|P48157|RL11_LEIMA 60S ribosomal protein L11 244 1e-64
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 243 2e-64
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 243 2e-64
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5) 240 2e-63
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 262 bits (669), Expect = 5e-70
Identities = 127/169 (75%), Positives = 146/169 (86%)
Frame = +2
Query: 5 EVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNE 184
E ENPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNE
Sbjct: 7 EKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNE 66
Query: 185 KISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIY 364
KI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIY
Sbjct: 67 KIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIY 126
Query: 365 GMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 511
G+DFYVVL R G +A ++++ IGAKHRI+KEEA +WFQQ YDGI+L
Sbjct: 127 GLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
>sp|Q29205|RL11_PIG 60S ribosomal protein L11
Length = 178
Score = 260 bits (664), Expect = 2e-69
Identities = 126/169 (74%), Positives = 146/169 (86%)
Frame = +2
Query: 5 EVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNE 184
E ENPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNE
Sbjct: 7 EKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNE 66
Query: 185 KISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIY 364
KI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIY
Sbjct: 67 KIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIY 126
Query: 365 GMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 511
G+DFYVVL R G +A ++++ IGAKHRI+KEEA +WFQQ +DGI+L
Sbjct: 127 GLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 260 bits (664), Expect = 2e-69
Identities = 124/167 (74%), Positives = 144/167 (86%)
Frame = +2
Query: 11 ENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKI 190
ENPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI
Sbjct: 9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKI 68
Query: 191 SVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGM 370
+V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+
Sbjct: 69 AVHCTVRGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGL 128
Query: 371 DFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 511
DFYVVL R G +A +++++ RIG KHRI K EA +WFQQ YDG++L
Sbjct: 129 DFYVVLGRPGFSIADKKRKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 259 bits (661), Expect = 4e-69
Identities = 123/168 (73%), Positives = 143/168 (85%)
Frame = +2
Query: 11 ENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKI 190
+NPMR + I KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKAR T+RSF IRRNEKI
Sbjct: 14 KNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 73
Query: 191 SVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGM 370
+V+ TVRG KAEEILE+GLKV EYEL++ FS GNFGFGI EHIDLG+KYDPSIGIYG+
Sbjct: 74 AVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGL 133
Query: 371 DFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLN 514
DFYVVL R G V +R+++ +G +HR+TKE+A KWFQQ YDGI+LN
Sbjct: 134 DFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 252 bits (644), Expect = 4e-67
Identities = 124/166 (74%), Positives = 138/166 (83%)
Frame = +2
Query: 14 NPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKIS 193
N MR++KI KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+R+F IRRNEKI+
Sbjct: 17 NVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIA 76
Query: 194 VYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMD 373
V+ TVRG KAEEILEKGLKV EYEL K FS GNFGFG+ EHIDLG+KYDP IGIYGMD
Sbjct: 77 VHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMD 136
Query: 374 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 511
FYVVL+R G RV+ RR+ RIG HR+ KEE KWFQQ YDGI+L
Sbjct: 137 FYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>sp|P42922|RL11_LEICH 60S ribosomal protein L11
Length = 188
Score = 245 bits (625), Expect = 6e-65
Identities = 117/169 (69%), Positives = 141/169 (83%)
Frame = +2
Query: 2 TEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRN 181
++ NPMR+I + KLC+NICVGESGDRLTRA KVLEQL Q PV S+ARLT+R+F IRRN
Sbjct: 5 SKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRN 64
Query: 182 EKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGI 361
EKI+V+ TVRGKKAEE+LEKGLKV E+ELK FS G+FGFGI EHIDLG+KYDPS GI
Sbjct: 65 EKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTGI 124
Query: 362 YGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 508
YGMDFYVVL R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 125 YGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
Length = 188
Score = 244 bits (622), Expect = 1e-64
Identities = 116/169 (68%), Positives = 141/169 (83%)
Frame = +2
Query: 2 TEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRN 181
++ NPMR+I + KLC+NICVGESGDRLTRA KVLEQL Q PV S+ARLT+R+F IRRN
Sbjct: 5 SKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRN 64
Query: 182 EKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGI 361
EKI+V+ TVRGKKAEE+LEKGLKV E+ELK F+ G+FGFGI EHIDLG+KYDPS GI
Sbjct: 65 EKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIKYDPSTGI 124
Query: 362 YGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 508
YGMDFYVVL R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 125 YGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 243 bits (621), Expect = 2e-64
Identities = 118/171 (69%), Positives = 140/171 (81%)
Frame = +2
Query: 5 EVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNE 184
++ NPMR IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNE
Sbjct: 6 KLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNE 65
Query: 185 KISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIY 364
KI+ Y TVRG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 365 GMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 517
GMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 243 bits (621), Expect = 2e-64
Identities = 118/171 (69%), Positives = 140/171 (81%)
Frame = +2
Query: 5 EVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNE 184
++ NPMR IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNE
Sbjct: 6 KLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNE 65
Query: 185 KISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIY 364
KI+ Y TVRG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIY
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 365 GMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 517
GMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
Length = 181
Score = 240 bits (613), Expect = 2e-63
Identities = 116/171 (67%), Positives = 139/171 (81%)
Frame = +2
Query: 5 EVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNE 184
++ NPMR+IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNE
Sbjct: 6 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNE 65
Query: 185 KISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIY 364
KI+ Y TVRG KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIY
Sbjct: 66 KIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 365 GMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 517
GMDF+VVL R G RV RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 126 GMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,233,872
Number of Sequences: 369166
Number of extensions: 1011858
Number of successful extensions: 3504
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3443
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)