Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_A11
(320 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50881|RL11_CHLRE 60S ribosomal protein L11 136 1e-32
sp|P46222|RL11_DROME 60S ribosomal protein L11 136 2e-32
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 135 2e-32
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 135 4e-32
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 134 8e-32
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 134 8e-32
sp|Q29205|RL11_PIG 60S ribosomal protein L11 134 8e-32
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 132 2e-31
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5) 130 7e-31
sp|Q10157|RL11_SCHPO 60S ribosomal protein L11 130 1e-30
>sp|P50881|RL11_CHLRE 60S ribosomal protein L11
Length = 170
Score = 136 bits (343), Expect = 1e-32
Identities = 63/92 (68%), Positives = 74/92 (80%)
Frame = +1
Query: 1 GLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRR 180
GL V E+EL + FS GNFGFGI EHIDLGLKYDPS GIYGMDFYV L R G RVA RR
Sbjct: 75 GLAVKEFELIRKNFSDTGNFGFGIQEHIDLGLKYDPSTGIYGMDFYVCLERRGYRVARRR 134
Query: 181 QQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 276
+QK+ +G KH++TKE+A KWFQQ +DG++LNK
Sbjct: 135 KQKAHVGVKHKVTKEDAIKWFQQEFDGVVLNK 166
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 136 bits (342), Expect = 2e-32
Identities = 61/91 (67%), Positives = 74/91 (81%)
Frame = +1
Query: 1 GLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRR 180
GLKV EYEL++ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G V +R+
Sbjct: 91 GLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRK 150
Query: 181 QQKSRIGAKHRITKEEAQKWFQQNYDGILLN 273
++ +G +HR+TKE+A KWFQQ YDGI+LN
Sbjct: 151 RKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 135 bits (341), Expect = 2e-32
Identities = 63/90 (70%), Positives = 75/90 (83%)
Frame = +1
Query: 1 GLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRR 180
GLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G +A ++
Sbjct: 86 GLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKK 145
Query: 181 QQKSRIGAKHRITKEEAQKWFQQNYDGILL 270
++ IGAKHRI+KEEA +WFQQ YDGI+L
Sbjct: 146 RRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 135 bits (339), Expect = 4e-32
Identities = 61/90 (67%), Positives = 74/90 (82%)
Frame = +1
Query: 1 GLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRR 180
GLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G +A ++
Sbjct: 86 GLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKK 145
Query: 181 QQKSRIGAKHRITKEEAQKWFQQNYDGILL 270
+++ RIG KHRI K EA +WFQQ YDG++L
Sbjct: 146 RKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 134 bits (336), Expect = 8e-32
Identities = 62/92 (67%), Positives = 74/92 (80%)
Frame = +1
Query: 1 GLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRR 180
GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMDFYVVL R G RVA RR
Sbjct: 85 GLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRR 144
Query: 181 QQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 276
+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 145 RCKTRVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 134 bits (336), Expect = 8e-32
Identities = 62/92 (67%), Positives = 74/92 (80%)
Frame = +1
Query: 1 GLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRR 180
GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMDFYVVL R G RVA RR
Sbjct: 85 GLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRR 144
Query: 181 QQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 276
+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 145 RCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|Q29205|RL11_PIG 60S ribosomal protein L11
Length = 178
Score = 134 bits (336), Expect = 8e-32
Identities = 62/90 (68%), Positives = 75/90 (83%)
Frame = +1
Query: 1 GLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRR 180
GLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL R G +A ++
Sbjct: 86 GLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKK 145
Query: 181 QQKSRIGAKHRITKEEAQKWFQQNYDGILL 270
++ IGAKHRI+KEEA +WFQQ +DGI+L
Sbjct: 146 RRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 132 bits (333), Expect = 2e-31
Identities = 63/90 (70%), Positives = 70/90 (77%)
Frame = +1
Query: 1 GLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRR 180
GLKV EYEL K FS GNFGFG+ EHIDLG+KYDP IGIYGMDFYVVL+R G RV+ RR
Sbjct: 93 GLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRR 152
Query: 181 QQKSRIGAKHRITKEEAQKWFQQNYDGILL 270
+ RIG HR+ KEE KWFQQ YDGI+L
Sbjct: 153 RAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
Length = 181
Score = 130 bits (328), Expect = 7e-31
Identities = 60/92 (65%), Positives = 73/92 (79%)
Frame = +1
Query: 1 GLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRR 180
GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMDF+VVL R G RV RR
Sbjct: 85 GLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRR 144
Query: 181 QQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 276
+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 145 RCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|Q10157|RL11_SCHPO 60S ribosomal protein L11
Length = 174
Score = 130 bits (326), Expect = 1e-30
Identities = 60/92 (65%), Positives = 70/92 (76%)
Frame = +1
Query: 1 GLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRR 180
GLKV EYELKK FS GNFGFGI EHIDLG+KYDPSIGIYGMDFYVV+ R G RVA R+
Sbjct: 83 GLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRK 142
Query: 181 QQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 276
Q+ R+G H+I E+ WF+Q YD ++L K
Sbjct: 143 AQRGRVGYTHKINAEDTINWFKQKYDAVVLGK 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,980,602
Number of Sequences: 369166
Number of extensions: 543594
Number of successful extensions: 1735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1707
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)