Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_N18
(263 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50881|RL11_CHLRE 60S ribosomal protein L11 114 5e-26
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 111 4e-25
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 111 4e-25
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5) 108 4e-24
sp|P46222|RL11_DROME 60S ribosomal protein L11 108 4e-24
sp|O22540|RL11_ORYSA 60S ribosomal protein L11 107 6e-24
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 106 1e-23
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 105 2e-23
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 105 3e-23
sp|P48157|RL11_LEIMA 60S ribosomal protein L11 105 4e-23
>sp|P50881|RL11_CHLRE 60S ribosomal protein L11
Length = 170
Score = 114 bits (286), Expect = 5e-26
Identities = 51/71 (71%), Positives = 60/71 (84%)
Frame = +2
Query: 2 FGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWF 181
FGI EHIDLGLKYDPS GIYGMDFYV L R G RVA RR+QK+ +G KH++TKE+A KWF
Sbjct: 96 FGIQEHIDLGLKYDPSTGIYGMDFYVCLERRGYRVARRRKQKAHVGVKHKVTKEDAIKWF 155
Query: 182 QQNYDGILLNK 214
QQ +DG++LNK
Sbjct: 156 QQEFDGVVLNK 166
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 111 bits (278), Expect = 4e-25
Identities = 49/71 (69%), Positives = 60/71 (84%)
Frame = +2
Query: 2 FGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWF 181
FGI EHIDLG+KYDPS GIYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWF
Sbjct: 106 FGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWF 165
Query: 182 QQNYDGILLNK 214
Q Y+G++LNK
Sbjct: 166 QVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 111 bits (278), Expect = 4e-25
Identities = 49/71 (69%), Positives = 60/71 (84%)
Frame = +2
Query: 2 FGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWF 181
FGI EHIDLG+KYDPS GIYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWF
Sbjct: 106 FGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWF 165
Query: 182 QQNYDGILLNK 214
Q Y+G++LNK
Sbjct: 166 QVKYEGVILNK 176
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
Length = 181
Score = 108 bits (270), Expect = 4e-24
Identities = 47/71 (66%), Positives = 59/71 (83%)
Frame = +2
Query: 2 FGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWF 181
FGI EHIDLG+KYDPS GIYGMDF+VVL R G RV RR+ K+R+G +HR+TK++A KWF
Sbjct: 106 FGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWF 165
Query: 182 QQNYDGILLNK 214
Q Y+G++LNK
Sbjct: 166 QVKYEGVILNK 176
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 108 bits (270), Expect = 4e-24
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +2
Query: 2 FGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWF 181
FGI EHIDLG+KYDPSIGIYG+DFYVVL R G V +R+++ +G +HR+TKE+A KWF
Sbjct: 112 FGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWF 171
Query: 182 QQNYDGILLN 211
QQ YDGI+LN
Sbjct: 172 QQKYDGIILN 181
>sp|O22540|RL11_ORYSA 60S ribosomal protein L11
Length = 182
Score = 107 bits (268), Expect = 6e-24
Identities = 48/71 (67%), Positives = 58/71 (81%)
Frame = +2
Query: 2 FGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWF 181
FGI EHIDLG++ DPS G YGMDFYVVL RAG RVA RR+ KSR+G +HR+TKE+A KWF
Sbjct: 106 FGIQEHIDLGIQCDPSTGFYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWF 165
Query: 182 QQNYDGILLNK 214
Q Y+G++ NK
Sbjct: 166 QVKYEGVIFNK 176
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 106 bits (265), Expect = 1e-23
Identities = 48/69 (69%), Positives = 58/69 (84%)
Frame = +2
Query: 2 FGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWF 181
FGI EHIDLG+KYDPSIGIYG+DFYVVL R G +A ++++ IGAKHRI+KEEA +WF
Sbjct: 107 FGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWF 166
Query: 182 QQNYDGILL 208
QQ YDGI+L
Sbjct: 167 QQKYDGIIL 175
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 105 bits (263), Expect = 2e-23
Identities = 48/69 (69%), Positives = 55/69 (79%)
Frame = +2
Query: 2 FGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWF 181
FG+ EHIDLG+KYDP IGIYGMDFYVVL+R G RV+ RR+ RIG HR+ KEE KWF
Sbjct: 114 FGVQEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWF 173
Query: 182 QQNYDGILL 208
QQ YDGI+L
Sbjct: 174 QQKYDGIIL 182
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 105 bits (262), Expect = 3e-23
Identities = 46/69 (66%), Positives = 57/69 (82%)
Frame = +2
Query: 2 FGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWF 181
FGI EHIDLG+KYDPSIGIYG+DFYVVL R G +A +++++ RIG KHRI K EA +WF
Sbjct: 107 FGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGRIGFKHRIRKREAMRWF 166
Query: 182 QQNYDGILL 208
QQ YDG++L
Sbjct: 167 QQKYDGVIL 175
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
Length = 188
Score = 105 bits (261), Expect = 4e-23
Identities = 46/68 (67%), Positives = 57/68 (83%)
Frame = +2
Query: 2 FGITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWF 181
FGI EHIDLG+KYDPS GIYGMDFYVVL R G RVA+R+++ SR+G H +TKEEA KWF
Sbjct: 106 FGIDEHIDLGIKYDPSTGIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWF 165
Query: 182 QQNYDGIL 205
++ +DGI+
Sbjct: 166 EKVHDGII 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,829,297
Number of Sequences: 369166
Number of extensions: 358702
Number of successful extensions: 1195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)