Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_A12
(536 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 259 2e-69
sp|Q29205|RL11_PIG 60S ribosomal protein L11 258 8e-69
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 258 8e-69
sp|P46222|RL11_DROME 60S ribosomal protein L11 256 2e-68
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 251 1e-66
sp|P42922|RL11_LEICH 60S ribosomal protein L11 244 7e-65
sp|P48157|RL11_LEIMA 60S ribosomal protein L11 243 2e-64
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 243 3e-64
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 243 3e-64
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5) 239 2e-63
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 259 bits (663), Expect = 2e-69
Identities = 126/169 (74%), Positives = 145/169 (85%)
Frame = +1
Query: 7 EVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNE 186
E ENPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNE
Sbjct: 7 EKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNE 66
Query: 187 KISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIY 366
KI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIY
Sbjct: 67 KIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIY 126
Query: 367 GMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDSILL 513
G+DFYVVL R G +A ++++ IGAKHRI+KEEA +WFQQ YD I+L
Sbjct: 127 GLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
>sp|Q29205|RL11_PIG 60S ribosomal protein L11
Length = 178
Score = 258 bits (658), Expect = 8e-69
Identities = 125/169 (73%), Positives = 145/169 (85%)
Frame = +1
Query: 7 EVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNE 186
E ENPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNE
Sbjct: 7 EKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNE 66
Query: 187 KISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIY 366
KI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIY
Sbjct: 67 KIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIY 126
Query: 367 GMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDSILL 513
G+DFYVVL R G +A ++++ IGAKHRI+KEEA +WFQQ +D I+L
Sbjct: 127 GLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 258 bits (658), Expect = 8e-69
Identities = 123/167 (73%), Positives = 143/167 (85%)
Frame = +1
Query: 13 ENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKI 192
ENPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI
Sbjct: 9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKI 68
Query: 193 SVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGM 372
+V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+
Sbjct: 69 AVHCTVRGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGL 128
Query: 373 DFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDSILL 513
DFYVVL R G +A +++++ RIG KHRI K EA +WFQQ YD ++L
Sbjct: 129 DFYVVLGRPGFSIADKKRKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 256 bits (655), Expect = 2e-68
Identities = 122/168 (72%), Positives = 142/168 (84%)
Frame = +1
Query: 13 ENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKI 192
+NPMR + I KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKAR T+RSF IRRNEKI
Sbjct: 14 KNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 73
Query: 193 SVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGM 372
+V+ TVRG KAEEILE+GLKV EYEL++ FS GNFGFGI EHIDLG+KYDPSIGIYG+
Sbjct: 74 AVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGL 133
Query: 373 DFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDSILLN 516
DFYVVL R G V +R+++ +G +HR+TKE+A KWFQQ YD I+LN
Sbjct: 134 DFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 251 bits (640), Expect = 1e-66
Identities = 124/171 (72%), Positives = 139/171 (81%)
Frame = +1
Query: 1 ETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRR 180
E + N MR++KI KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+R+F IRR
Sbjct: 12 EKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRR 71
Query: 181 NEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIG 360
NEKI+V+ TVRG KAEEILEKGLKV EYEL K FS GNFGFG+ EHIDLG+KYDP IG
Sbjct: 72 NEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIG 131
Query: 361 IYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDSILL 513
IYGMDFYVVL+R G RV+ RR+ RIG HR+ KEE KWFQQ YD I+L
Sbjct: 132 IYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>sp|P42922|RL11_LEICH 60S ribosomal protein L11
Length = 188
Score = 244 bits (624), Expect = 7e-65
Identities = 117/170 (68%), Positives = 141/170 (82%)
Frame = +1
Query: 1 ETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRR 180
E++ NPMR+I + KLC+NICVGESGDRLTRA KVLEQL Q PV S+ARLT+R+F IRR
Sbjct: 4 ESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRR 63
Query: 181 NEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIG 360
NEKI+V+ TVRGKKAEE+LEKGLKV E+ELK FS G+FGFGI EHIDLG+KYDPS G
Sbjct: 64 NEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTG 123
Query: 361 IYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDSIL 510
IYGMDFYVVL R G RVA+R+++ SR+G H +TKEEA KWF++ +D I+
Sbjct: 124 IYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
Length = 188
Score = 243 bits (621), Expect = 2e-64
Identities = 116/170 (68%), Positives = 141/170 (82%)
Frame = +1
Query: 1 ETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRR 180
E++ NPMR+I + KLC+NICVGESGDRLTRA KVLEQL Q PV S+ARLT+R+F IRR
Sbjct: 4 ESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRR 63
Query: 181 NEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIG 360
NEKI+V+ TVRGKKAEE+LEKGLKV E+ELK F+ G+FGFGI EHIDLG+KYDPS G
Sbjct: 64 NEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIKYDPSTG 123
Query: 361 IYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDSIL 510
IYGMDFYVVL R G RVA+R+++ SR+G H +TKEEA KWF++ +D I+
Sbjct: 124 IYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 243 bits (619), Expect = 3e-64
Identities = 118/173 (68%), Positives = 140/173 (80%)
Frame = +1
Query: 1 ETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRR 180
E ++ NPMR IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRR
Sbjct: 4 EKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRR 63
Query: 181 NEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIG 360
NEKI+ Y TVRG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS G
Sbjct: 64 NEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTG 123
Query: 361 IYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDSILLNK 519
IYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+ ++LNK
Sbjct: 124 IYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 243 bits (619), Expect = 3e-64
Identities = 118/173 (68%), Positives = 140/173 (80%)
Frame = +1
Query: 1 ETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRR 180
E ++ NPMR IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRR
Sbjct: 4 EKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRR 63
Query: 181 NEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIG 360
NEKI+ Y TVRG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS G
Sbjct: 64 NEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTG 123
Query: 361 IYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDSILLNK 519
IYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+ ++LNK
Sbjct: 124 IYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
Length = 181
Score = 239 bits (611), Expect = 2e-63
Identities = 116/173 (67%), Positives = 139/173 (80%)
Frame = +1
Query: 1 ETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRR 180
E ++ NPMR+IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRR
Sbjct: 4 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRR 63
Query: 181 NEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIG 360
NEKI+ Y TVRG KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS G
Sbjct: 64 NEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTG 123
Query: 361 IYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDSILLNK 519
IYGMDF+VVL R G RV RR+ K+R+G +HR+TK++A KWFQ Y+ ++LNK
Sbjct: 124 IYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,120,972
Number of Sequences: 369166
Number of extensions: 976958
Number of successful extensions: 3458
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3397
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)