Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_D24
(540 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 252 5e-67
sp|P46222|RL11_DROME 60S ribosomal protein L11 251 6e-67
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 251 8e-67
sp|Q29205|RL11_PIG 60S ribosomal protein L11 250 2e-66
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 249 4e-66
sp|P42922|RL11_LEICH 60S ribosomal protein L11 238 9e-63
sp|P48157|RL11_LEIMA 60S ribosomal protein L11 236 2e-62
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 236 3e-62
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 236 3e-62
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5) 233 3e-61
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 252 bits (643), Expect = 5e-67
Identities = 122/163 (74%), Positives = 141/163 (86%)
Frame = +2
Query: 2 RKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYA 181
R+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI+V+
Sbjct: 13 RELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHC 72
Query: 182 TVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYV 361
TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYV
Sbjct: 73 TVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYV 132
Query: 362 VLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 490
VL R G +A ++++ IGAKHRI+KEEA +WFQQ YDGI+L
Sbjct: 133 VLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 251 bits (642), Expect = 6e-67
Identities = 120/164 (73%), Positives = 139/164 (84%)
Frame = +2
Query: 2 RKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYA 181
R + I KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKAR T+RSF IRRNEKI+V+
Sbjct: 18 RDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHC 77
Query: 182 TVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYV 361
TVRG KAEEILE+GLKV EYEL++ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYV
Sbjct: 78 TVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYV 137
Query: 362 VLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLN 493
VL R G V +R+++ +G +HR+TKE+A KWFQQ YDGI+LN
Sbjct: 138 VLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 251 bits (641), Expect = 8e-67
Identities = 120/163 (73%), Positives = 140/163 (85%)
Frame = +2
Query: 2 RKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYA 181
R+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI+V+
Sbjct: 13 RELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHC 72
Query: 182 TVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYV 361
TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYV
Sbjct: 73 TVRGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYV 132
Query: 362 VLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 490
VL R G +A +++++ RIG KHRI K EA +WFQQ YDG++L
Sbjct: 133 VLGRPGFSIADKKRKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175
>sp|Q29205|RL11_PIG 60S ribosomal protein L11
Length = 178
Score = 250 bits (638), Expect = 2e-66
Identities = 121/163 (74%), Positives = 141/163 (86%)
Frame = +2
Query: 2 RKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYA 181
R+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI+V+
Sbjct: 13 RELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHC 72
Query: 182 TVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYV 361
TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYV
Sbjct: 73 TVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYV 132
Query: 362 VLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 490
VL R G +A ++++ IGAKHRI+KEEA +WFQQ +DGI+L
Sbjct: 133 VLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 249 bits (635), Expect = 4e-66
Identities = 122/163 (74%), Positives = 136/163 (83%)
Frame = +2
Query: 2 RKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYA 181
R++KI KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+R+F IRRNEKI+V+
Sbjct: 20 RELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHC 79
Query: 182 TVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYV 361
TVRG KAEEILEKGLKV EYEL K FS GNFGFG+ EHIDLG+KYDP IGIYGMDFYV
Sbjct: 80 TVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYV 139
Query: 362 VLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 490
VL+R G RV+ RR+ RIG HR+ KEE KWFQQ YDGI+L
Sbjct: 140 VLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>sp|P42922|RL11_LEICH 60S ribosomal protein L11
Length = 188
Score = 238 bits (606), Expect = 9e-63
Identities = 114/162 (70%), Positives = 136/162 (83%)
Frame = +2
Query: 2 RKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYA 181
R+I + KLC+NICVGESGDRLTRA KVLEQL Q PV S+ARLT+R+F IRRNEKI+V+
Sbjct: 12 REIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIAVHC 71
Query: 182 TVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYV 361
TVRGKKAEE+LEKGLKV E+ELK FS G+FGFGI EHIDLG+KYDPS GIYGMDFYV
Sbjct: 72 TVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYV 131
Query: 362 VLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 487
VL R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 132 VLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
Length = 188
Score = 236 bits (603), Expect = 2e-62
Identities = 113/162 (69%), Positives = 136/162 (83%)
Frame = +2
Query: 2 RKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYA 181
R+I + KLC+NICVGESGDRLTRA KVLEQL Q PV S+ARLT+R+F IRRNEKI+V+
Sbjct: 12 REIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIAVHC 71
Query: 182 TVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYV 361
TVRGKKAEE+LEKGLKV E+ELK F+ G+FGFGI EHIDLG+KYDPS GIYGMDFYV
Sbjct: 72 TVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYV 131
Query: 362 VLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 487
VL R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 132 VLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 236 bits (601), Expect = 3e-62
Identities = 115/165 (69%), Positives = 135/165 (81%)
Frame = +2
Query: 2 RKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYA 181
R IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNEKI+ Y
Sbjct: 12 RDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYV 71
Query: 182 TVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYV 361
TVRG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMDFYV
Sbjct: 72 TVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYV 131
Query: 362 VLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 496
VL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 132 VLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 236 bits (601), Expect = 3e-62
Identities = 115/165 (69%), Positives = 135/165 (81%)
Frame = +2
Query: 2 RKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYA 181
R IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNEKI+ Y
Sbjct: 12 RDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYV 71
Query: 182 TVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYV 361
TVRG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMDFYV
Sbjct: 72 TVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYV 131
Query: 362 VLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 496
VL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 132 VLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
Length = 181
Score = 233 bits (593), Expect = 3e-61
Identities = 113/165 (68%), Positives = 134/165 (81%)
Frame = +2
Query: 2 RKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYA 181
R+IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNEKI+ Y
Sbjct: 12 REIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYV 71
Query: 182 TVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYV 361
TVRG KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMDF+V
Sbjct: 72 TVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFV 131
Query: 362 VLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 496
VL R G RV RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 132 VLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,438,066
Number of Sequences: 369166
Number of extensions: 950275
Number of successful extensions: 3328
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3273
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)