Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_L05
(626 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 263 4e-70
sp|Q29205|RL11_PIG 60S ribosomal protein L11 261 1e-69
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 260 2e-69
sp|P46222|RL11_DROME 60S ribosomal protein L11 259 5e-69
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 253 3e-67
sp|P42922|RL11_LEICH 60S ribosomal protein L11 247 2e-65
sp|P48157|RL11_LEIMA 60S ribosomal protein L11 246 4e-65
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 246 4e-65
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 246 4e-65
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5) 243 4e-64
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 263 bits (671), Expect = 4e-70
Identities = 128/174 (73%), Positives = 149/174 (85%)
Frame = +1
Query: 58 AKVETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFA 237
A+ + E ENPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF
Sbjct: 2 AQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFG 61
Query: 238 IRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDP 417
IRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDP
Sbjct: 62 IRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDP 121
Query: 418 SIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 579
SIGIYG+DFYVVL R G +A ++++ IGAKHRI+KEEA +WFQQ YDGI+L
Sbjct: 122 SIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
>sp|Q29205|RL11_PIG 60S ribosomal protein L11
Length = 178
Score = 261 bits (666), Expect = 1e-69
Identities = 127/174 (72%), Positives = 149/174 (85%)
Frame = +1
Query: 58 AKVETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFA 237
A+ + E ENPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF
Sbjct: 2 AQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFG 61
Query: 238 IRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDP 417
IRRNEKI+V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDP
Sbjct: 62 IRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDP 121
Query: 418 SIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 579
SIGIYG+DFYVVL R G +A ++++ IGAKHRI+KEEA +WFQQ +DGI+L
Sbjct: 122 SIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 260 bits (664), Expect = 2e-69
Identities = 124/167 (74%), Positives = 144/167 (86%)
Frame = +1
Query: 79 ENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKI 258
ENPMR+++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI
Sbjct: 9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKI 68
Query: 259 SVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGM 438
+V+ TVRG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+
Sbjct: 69 AVHCTVRGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGL 128
Query: 439 DFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 579
DFYVVL R G +A +++++ RIG KHRI K EA +WFQQ YDG++L
Sbjct: 129 DFYVVLGRPGFSIADKKRKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 259 bits (661), Expect = 5e-69
Identities = 123/168 (73%), Positives = 143/168 (85%)
Frame = +1
Query: 79 ENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKI 258
+NPMR + I KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKAR T+RSF IRRNEKI
Sbjct: 14 KNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 73
Query: 259 SVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGM 438
+V+ TVRG KAEEILE+GLKV EYEL++ FS GNFGFGI EHIDLG+KYDPSIGIYG+
Sbjct: 74 AVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGL 133
Query: 439 DFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLN 582
DFYVVL R G V +R+++ +G +HR+TKE+A KWFQQ YDGI+LN
Sbjct: 134 DFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 253 bits (646), Expect = 3e-67
Identities = 125/171 (73%), Positives = 140/171 (81%)
Frame = +1
Query: 67 ETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRR 246
E + N MR++KI KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+R+F IRR
Sbjct: 12 EKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRR 71
Query: 247 NEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIG 426
NEKI+V+ TVRG KAEEILEKGLKV EYEL K FS GNFGFG+ EHIDLG+KYDP IG
Sbjct: 72 NEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIG 131
Query: 427 IYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 579
IYGMDFYVVL+R G RV+ RR+ RIG HR+ KEE KWFQQ YDGI+L
Sbjct: 132 IYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>sp|P42922|RL11_LEICH 60S ribosomal protein L11
Length = 188
Score = 247 bits (630), Expect = 2e-65
Identities = 118/170 (69%), Positives = 142/170 (83%)
Frame = +1
Query: 67 ETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRR 246
E++ NPMR+I + KLC+NICVGESGDRLTRA KVLEQL Q PV S+ARLT+R+F IRR
Sbjct: 4 ESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRR 63
Query: 247 NEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIG 426
NEKI+V+ TVRGKKAEE+LEKGLKV E+ELK FS G+FGFGI EHIDLG+KYDPS G
Sbjct: 64 NEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTG 123
Query: 427 IYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 576
IYGMDFYVVL R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 124 IYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
Length = 188
Score = 246 bits (627), Expect = 4e-65
Identities = 117/170 (68%), Positives = 142/170 (83%)
Frame = +1
Query: 67 ETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRR 246
E++ NPMR+I + KLC+NICVGESGDRLTRA KVLEQL Q PV S+ARLT+R+F IRR
Sbjct: 4 ESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRR 63
Query: 247 NEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIG 426
NEKI+V+ TVRGKKAEE+LEKGLKV E+ELK F+ G+FGFGI EHIDLG+KYDPS G
Sbjct: 64 NEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIKYDPSTG 123
Query: 427 IYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 576
IYGMDFYVVL R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 124 IYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 246 bits (627), Expect = 4e-65
Identities = 123/180 (68%), Positives = 144/180 (80%)
Frame = +1
Query: 46 MASEAKVETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTI 225
MASE K+ NPMR IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+
Sbjct: 1 MASEKKLS----NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTV 56
Query: 226 RSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGL 405
RSF IRRNEKI+ Y TVRG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+
Sbjct: 57 RSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGI 116
Query: 406 KYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 585
KYDPS GIYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 117 KYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 246 bits (627), Expect = 4e-65
Identities = 123/180 (68%), Positives = 144/180 (80%)
Frame = +1
Query: 46 MASEAKVETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTI 225
MASE K+ NPMR IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+
Sbjct: 1 MASEKKLS----NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTV 56
Query: 226 RSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGL 405
RSF IRRNEKI+ Y TVRG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+
Sbjct: 57 RSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGI 116
Query: 406 KYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 585
KYDPS GIYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 117 KYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
Length = 181
Score = 243 bits (619), Expect = 4e-64
Identities = 121/180 (67%), Positives = 143/180 (79%)
Frame = +1
Query: 46 MASEAKVETEVENPMRKIKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTI 225
MASE K+ NPMR+IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+
Sbjct: 1 MASEKKLS----NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTV 56
Query: 226 RSFAIRRNEKISVYATVRGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGL 405
RSF IRRNEKI+ Y TVRG KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+
Sbjct: 57 RSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGI 116
Query: 406 KYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 585
KYDPS GIYGMDF+VVL R G RV RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 117 KYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,462,769
Number of Sequences: 369166
Number of extensions: 1079056
Number of successful extensions: 3746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3685
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)