Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_K21
(251 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50881|RL11_CHLRE 60S ribosomal protein L11 110 1e-24
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 107 1e-23
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 107 1e-23
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5) 103 9e-23
sp|P46222|RL11_DROME 60S ribosomal protein L11 103 9e-23
sp|O22540|RL11_ORYSA 60S ribosomal protein L11 103 2e-22
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 102 4e-22
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 101 6e-22
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 100 8e-22
sp|P48157|RL11_LEIMA 60S ribosomal protein L11 100 1e-21
>sp|P50881|RL11_CHLRE 60S ribosomal protein L11
Length = 170
Score = 110 bits (274), Expect = 1e-24
Identities = 49/69 (71%), Positives = 58/69 (84%)
Frame = +1
Query: 1 ITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQ 180
I EHIDLGLKYDPS GIYGMDFYV L R G RVA RR+QK+ +G KH++TKE+A KWFQQ
Sbjct: 98 IQEHIDLGLKYDPSTGIYGMDFYVCLERRGYRVARRRKQKAHVGVKHKVTKEDAIKWFQQ 157
Query: 181 NYDGILLNK 207
+DG++LNK
Sbjct: 158 EFDGVVLNK 166
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 107 bits (266), Expect = 1e-23
Identities = 47/69 (68%), Positives = 58/69 (84%)
Frame = +1
Query: 1 ITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQ 180
I EHIDLG+KYDPS GIYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ
Sbjct: 108 IQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQV 167
Query: 181 NYDGILLNK 207
Y+G++LNK
Sbjct: 168 KYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 107 bits (266), Expect = 1e-23
Identities = 47/69 (68%), Positives = 58/69 (84%)
Frame = +1
Query: 1 ITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQ 180
I EHIDLG+KYDPS GIYGMDFYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ
Sbjct: 108 IQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQV 167
Query: 181 NYDGILLNK 207
Y+G++LNK
Sbjct: 168 KYEGVILNK 176
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
Length = 181
Score = 103 bits (258), Expect = 9e-23
Identities = 45/69 (65%), Positives = 57/69 (82%)
Frame = +1
Query: 1 ITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQ 180
I EHIDLG+KYDPS GIYGMDF+VVL R G RV RR+ K+R+G +HR+TK++A KWFQ
Sbjct: 108 IQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQV 167
Query: 181 NYDGILLNK 207
Y+G++LNK
Sbjct: 168 KYEGVILNK 176
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 103 bits (258), Expect = 9e-23
Identities = 45/68 (66%), Positives = 56/68 (82%)
Frame = +1
Query: 1 ITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQ 180
I EHIDLG+KYDPSIGIYG+DFYVVL R G V +R+++ +G +HR+TKE+A KWFQQ
Sbjct: 114 IQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQ 173
Query: 181 NYDGILLN 204
YDGI+LN
Sbjct: 174 KYDGIILN 181
>sp|O22540|RL11_ORYSA 60S ribosomal protein L11
Length = 182
Score = 103 bits (256), Expect = 2e-22
Identities = 46/69 (66%), Positives = 56/69 (81%)
Frame = +1
Query: 1 ITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQ 180
I EHIDLG++ DPS G YGMDFYVVL RAG RVA RR+ KSR+G +HR+TKE+A KWFQ
Sbjct: 108 IQEHIDLGIQCDPSTGFYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQV 167
Query: 181 NYDGILLNK 207
Y+G++ NK
Sbjct: 168 KYEGVIFNK 176
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 102 bits (253), Expect = 4e-22
Identities = 46/67 (68%), Positives = 56/67 (83%)
Frame = +1
Query: 1 ITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQ 180
I EHIDLG+KYDPSIGIYG+DFYVVL R G +A ++++ IGAKHRI+KEEA +WFQQ
Sbjct: 109 IQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQ 168
Query: 181 NYDGILL 201
YDGI+L
Sbjct: 169 KYDGIIL 175
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 101 bits (251), Expect = 6e-22
Identities = 46/67 (68%), Positives = 53/67 (79%)
Frame = +1
Query: 1 ITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQ 180
+ EHIDLG+KYDP IGIYGMDFYVVL+R G RV+ RR+ RIG HR+ KEE KWFQQ
Sbjct: 116 VQEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQ 175
Query: 181 NYDGILL 201
YDGI+L
Sbjct: 176 KYDGIIL 182
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 100 bits (250), Expect = 8e-22
Identities = 44/67 (65%), Positives = 55/67 (82%)
Frame = +1
Query: 1 ITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQ 180
I EHIDLG+KYDPSIGIYG+DFYVVL R G +A +++++ RIG KHRI K EA +WFQQ
Sbjct: 109 IQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGRIGFKHRIRKREAMRWFQQ 168
Query: 181 NYDGILL 201
YDG++L
Sbjct: 169 KYDGVIL 175
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
Length = 188
Score = 100 bits (249), Expect = 1e-21
Identities = 44/66 (66%), Positives = 55/66 (83%)
Frame = +1
Query: 1 ITEHIDLGLKYDPSIGIYGMDFYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQ 180
I EHIDLG+KYDPS GIYGMDFYVVL R G RVA+R+++ SR+G H +TKEEA KWF++
Sbjct: 108 IDEHIDLGIKYDPSTGIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEK 167
Query: 181 NYDGIL 198
+DGI+
Sbjct: 168 VHDGII 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,140,660
Number of Sequences: 369166
Number of extensions: 322184
Number of successful extensions: 1127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)