Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_M16
(190 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O22540|RL11_ORYSA 60S ribosomal protein L11 71 7e-13
sp|P50881|RL11_CHLRE 60S ribosomal protein L11 71 9e-13
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 69 4e-12
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 69 4e-12
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5) 65 4e-11
sp|P46222|RL11_DROME 60S ribosomal protein L11 65 6e-11
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 63 2e-10
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 63 2e-10
sp|P48157|RL11_LEIMA 60S ribosomal protein L11 62 4e-10
sp|P42922|RL11_LEICH 60S ribosomal protein L11 62 4e-10
>sp|O22540|RL11_ORYSA 60S ribosomal protein L11
Length = 182
Score = 71.2 bits (173), Expect = 7e-13
Identities = 31/48 (64%), Positives = 39/48 (81%)
Frame = +3
Query: 3 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 146
FYVVL RAG RVA RR+ KSR+G +HR+TKE+A KWFQ Y+G++ NK
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVIFNK 176
>sp|P50881|RL11_CHLRE 60S ribosomal protein L11
Length = 170
Score = 70.9 bits (172), Expect = 9e-13
Identities = 30/48 (62%), Positives = 39/48 (81%)
Frame = +3
Query: 3 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 146
FYV L R G RVA RR+QK+ +G KH++TKE+A KWFQQ +DG++LNK
Sbjct: 119 FYVCLERRGYRVARRRKQKAHVGVKHKVTKEDAIKWFQQEFDGVVLNK 166
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 68.6 bits (166), Expect = 4e-12
Identities = 29/48 (60%), Positives = 39/48 (81%)
Frame = +3
Query: 3 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 146
FYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 68.6 bits (166), Expect = 4e-12
Identities = 29/48 (60%), Positives = 39/48 (81%)
Frame = +3
Query: 3 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 146
FYVVL R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 129 FYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
Length = 181
Score = 65.5 bits (158), Expect = 4e-11
Identities = 27/48 (56%), Positives = 38/48 (79%)
Frame = +3
Query: 3 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 146
F+VVL R G RV RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 129 FFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 64.7 bits (156), Expect = 6e-11
Identities = 27/47 (57%), Positives = 36/47 (76%)
Frame = +3
Query: 3 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLN 143
FYVVL R G V +R+++ +G +HR+TKE+A KWFQQ YDGI+LN
Sbjct: 135 FYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 62.8 bits (151), Expect = 2e-10
Identities = 28/46 (60%), Positives = 36/46 (78%)
Frame = +3
Query: 3 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 140
FYVVL R G +A ++++ IGAKHRI+KEEA +WFQQ YDGI+L
Sbjct: 130 FYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 62.8 bits (151), Expect = 2e-10
Identities = 29/46 (63%), Positives = 34/46 (73%)
Frame = +3
Query: 3 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 140
FYVVL+R G RV+ RR+ RIG HR+ KEE KWFQQ YDGI+L
Sbjct: 137 FYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
Length = 188
Score = 62.0 bits (149), Expect = 4e-10
Identities = 26/45 (57%), Positives = 36/45 (80%)
Frame = +3
Query: 3 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 137
FYVVL R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 129 FYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P42922|RL11_LEICH 60S ribosomal protein L11
Length = 188
Score = 62.0 bits (149), Expect = 4e-10
Identities = 26/45 (57%), Positives = 36/45 (80%)
Frame = +3
Query: 3 FYVVLSRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 137
FYVVL R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 129 FYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,751,940
Number of Sequences: 369166
Number of extensions: 166072
Number of successful extensions: 812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 68,354,980
effective HSP length: 35
effective length of database: 61,889,255
effective search space used: 1671009885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)