Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_C04
(531 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46222|RL11_DROME 60S ribosomal protein L11 250 2e-66
sp|P62914|RL11_RAT 60S ribosomal protein L11 >gi|51704334|s... 249 2e-66
sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 249 4e-66
sp|Q29205|RL11_PIG 60S ribosomal protein L11 248 9e-66
sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 246 2e-65
sp|P42922|RL11_LEICH 60S ribosomal protein L11 235 4e-62
sp|P48157|RL11_LEIMA 60S ribosomal protein L11 234 1e-61
sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16) 234 1e-61
sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A) 234 1e-61
sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5) 230 1e-60
>sp|P46222|RL11_DROME 60S ribosomal protein L11
Length = 184
Score = 250 bits (638), Expect = 2e-66
Identities = 119/162 (73%), Positives = 138/162 (85%)
Frame = +2
Query: 2 IKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYATV 181
+ I KLC+NICVGESGDRLTRA KVLEQLTGQQPVFSKAR T+RSF IRRNEKI+V+ TV
Sbjct: 20 LHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTV 79
Query: 182 RGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVL 361
RG KAEEILE+GLKV EYEL++ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL
Sbjct: 80 RGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL 139
Query: 362 SRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLN 487
R G V +R+++ +G +HR+TKE+A KWFQQ YDGI+LN
Sbjct: 140 GRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
>sp|P62914|RL11_RAT 60S ribosomal protein L11
sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11
sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11
sp|P62913|RL11_HUMAN 60S ribosomal protein L11 (CLL-associated antigen KW-12)
Length = 178
Score = 249 bits (637), Expect = 2e-66
Identities = 121/161 (75%), Positives = 139/161 (86%)
Frame = +2
Query: 2 IKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYATV 181
++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI+V+ TV
Sbjct: 15 LRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTV 74
Query: 182 RGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVL 361
RG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL
Sbjct: 75 RGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL 134
Query: 362 SRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 484
R G +A ++++ IGAKHRI+KEEA +WFQQ YDGI+L
Sbjct: 135 GRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11
Length = 178
Score = 249 bits (635), Expect = 4e-66
Identities = 119/161 (73%), Positives = 138/161 (85%)
Frame = +2
Query: 2 IKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYATV 181
++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI+V+ TV
Sbjct: 15 LRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTV 74
Query: 182 RGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVL 361
RG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL
Sbjct: 75 RGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL 134
Query: 362 SRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 484
R G +A +++++ RIG KHRI K EA +WFQQ YDG++L
Sbjct: 135 GRPGFSIADKKRKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175
>sp|Q29205|RL11_PIG 60S ribosomal protein L11
Length = 178
Score = 248 bits (632), Expect = 9e-66
Identities = 120/161 (74%), Positives = 139/161 (86%)
Frame = +2
Query: 2 IKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYATV 181
++I KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+RSF IRRNEKI+V+ TV
Sbjct: 15 LRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTV 74
Query: 182 RGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVL 361
RG KAEEILEKGLKV EYEL+K+ FS GNFGFGI EHIDLG+KYDPSIGIYG+DFYVVL
Sbjct: 75 RGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL 134
Query: 362 SRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 484
R G +A ++++ IGAKHRI+KEEA +WFQQ +DGI+L
Sbjct: 135 GRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11
Length = 196
Score = 246 bits (629), Expect = 2e-65
Identities = 121/161 (75%), Positives = 134/161 (83%)
Frame = +2
Query: 2 IKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYATV 181
+KI KLC+NICVGESGDRLTRA KVLEQLTGQ PVFSKAR T+R+F IRRNEKI+V+ TV
Sbjct: 22 LKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTV 81
Query: 182 RGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVL 361
RG KAEEILEKGLKV EYEL K FS GNFGFG+ EHIDLG+KYDP IGIYGMDFYVVL
Sbjct: 82 RGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVL 141
Query: 362 SRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILL 484
+R G RV+ RR+ RIG HR+ KEE KWFQQ YDGI+L
Sbjct: 142 NRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>sp|P42922|RL11_LEICH 60S ribosomal protein L11
Length = 188
Score = 235 bits (600), Expect = 4e-62
Identities = 113/160 (70%), Positives = 134/160 (83%)
Frame = +2
Query: 2 IKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYATV 181
I + KLC+NICVGESGDRLTRA KVLEQL Q PV S+ARLT+R+F IRRNEKI+V+ TV
Sbjct: 14 IVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIAVHCTV 73
Query: 182 RGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVL 361
RGKKAEE+LEKGLKV E+ELK FS G+FGFGI EHIDLG+KYDPS GIYGMDFYVVL
Sbjct: 74 RGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVL 133
Query: 362 SRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 481
R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 134 GRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11
Length = 188
Score = 234 bits (597), Expect = 1e-61
Identities = 112/160 (70%), Positives = 134/160 (83%)
Frame = +2
Query: 2 IKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYATV 181
I + KLC+NICVGESGDRLTRA KVLEQL Q PV S+ARLT+R+F IRRNEKI+V+ TV
Sbjct: 14 IVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIAVHCTV 73
Query: 182 RGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVL 361
RGKKAEE+LEKGLKV E+ELK F+ G+FGFGI EHIDLG+KYDPS GIYGMDFYVVL
Sbjct: 74 RGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVL 133
Query: 362 SRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGIL 481
R G RVA+R+++ SR+G H +TKEEA KWF++ +DGI+
Sbjct: 134 GRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 (L16)
Length = 182
Score = 234 bits (597), Expect = 1e-61
Identities = 114/163 (69%), Positives = 134/163 (82%)
Frame = +2
Query: 2 IKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYATV 181
IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNEKI+ Y TV
Sbjct: 14 IKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTV 73
Query: 182 RGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVL 361
RG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMDFYVVL
Sbjct: 74 RGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVL 133
Query: 362 SRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 490
R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 134 ERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 (L16A)
Length = 182
Score = 234 bits (597), Expect = 1e-61
Identities = 114/163 (69%), Positives = 134/163 (82%)
Frame = +2
Query: 2 IKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYATV 181
IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNEKI+ Y TV
Sbjct: 14 IKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTV 73
Query: 182 RGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVL 361
RG+KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMDFYVVL
Sbjct: 74 RGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVL 133
Query: 362 SRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 490
R G RVA RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 134 ERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 (L5)
Length = 181
Score = 230 bits (587), Expect = 1e-60
Identities = 112/163 (68%), Positives = 132/163 (80%)
Frame = +2
Query: 2 IKIHKLCVNICVGESGDRLTRAGKVLEQLTGQQPVFSKARLTIRSFAIRRNEKISVYATV 181
IK+ KL +NI VGESGDRLTRA KVLEQL+GQ PVFSKAR T+RSF IRRNEKI+ Y TV
Sbjct: 14 IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTV 73
Query: 182 RGKKAEEILEKGLKVLEYELKKSCFSQEGNFGFGITEHIDLGLKYDPSIGIYGMDFYVVL 361
RG KA ++LE GLKV EYEL + FS G FGFGI EHIDLG+KYDPS GIYGMDF+VVL
Sbjct: 74 RGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVL 133
Query: 362 SRAGRRVAYRRQQKSRIGAKHRITKEEAQKWFQQNYDGILLNK 490
R G RV RR+ K+R+G +HR+TK++A KWFQ Y+G++LNK
Sbjct: 134 ERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNK 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,662,193
Number of Sequences: 369166
Number of extensions: 934903
Number of successful extensions: 3276
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3221
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)