Planarian EST Database

DrC_00378

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00378 TCGATTTATTTTTGTTAAGCCGTTGTTTTTTTTAGATATGTCGAGAGCTGGAAACGGTCG TCAGATTTCTTTATCTTGGCTTCCAGGACAATATGGACAAGTACCGCATAATGCTATTCA GGCAGATCCTGGATTATACATTGTAAGAGCGAGAACTGGTGGTGATGTTACAGTTGGAAA AACAAAAGTCGGACATTCCACAGGATTTTTTCCTTATGCTGGCAGAGAAGATAATATTCC TCAATATGAGGTACTTTGTGATACTGGAGTACGTGTTTGGGGAAATGAATATGTCTGGCA ATGGATGGGGAATGGGGCAGTACCACATAATGCTGTTGTTGGAGGACACACAAGCTCTTA TGAACCACTGTACGTTGCTCGAGCAAGAGTAAGTGGTGATATGTGCGTTGGAAAAGTAGC ATCTTCACATAATTGTGCATTTATGCCATATGGGGGTAAGGAACACAAAGTTTATAAATA CGAAGTATTGTGCTACCGAGACTAATTGTATTGTTTGTGTTGATTTAAATTTTTGATTTT TATAAAAAGTAAAAAGTCTTCAGAATTTTT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00378
         (570 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7VKH9|RL31B_HAEDU  50S ribosomal protein L31 type B            33   0.65 
sp|O94874|K0776_HUMAN  Protein KIAA0776                            31   1.9  
sp|P17629|HPR1_YEAST  Protein HPR1                                 30   4.2  
sp|Q9P6S0|YJP1_SCHPO  Hypothetical threonine-rich protein C1...    29   7.2  
sp|P58955|GR36A_DROME  Putative gustatory receptor 36a             29   9.4

>sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B
          Length = 89

 Score = 32.7 bits (73), Expect = 0.65
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 391 YSCSSNVQWFIRACVSSNNSIMW 323
           Y  S+ + W IR+CV++N S+MW
Sbjct: 16  YDASAQMGWVIRSCVATNKSMMW 38

>sp|O94874|K0776_HUMAN Protein KIAA0776
          Length = 794

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 174 LEKQKSDIPQDFFLMLAEKIIF-LNMRYFVILEYVFGEMNMSGNGWGMGQYHIMLLLEDT 350
           L K   D P++F   LAE +I  LN  Y  ++  VF     S +G G  +  I  L E+ 
Sbjct: 486 LRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGR-KRTIKDLQEEV 544

Query: 351 QALMNHCTLLEQ 386
             L N+  L E+
Sbjct: 545 SNLYNNIRLFEK 556

>sp|P17629|HPR1_YEAST Protein HPR1
          Length = 752

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = -3

Query: 247 ILRNIIFSASIRK--KSC-----GMSDFCFSNCNITTSSRSYNV*SRICLNSIMRYLSI 92
           ++RN+I S   R   KSC      +SD  F N +     R  N+ S IC N ++++  I
Sbjct: 408 LIRNLISSDETRNFYKSCYLRENPLSDIDFENLDEVNKKRGLNLCSYICDNRVLKFYKI 466

>sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1742.01 in chromosome III
           precursor
          Length = 1563

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -1

Query: 417 TFPTHISPLTLARATYSGS*ELVC-PPTTALCGTAPFPIHCQTYSFPQTRTPVSQST 250
           T  T  +P T+   T SGS    C PPTT L  T P      T  +P + T     T
Sbjct: 165 TTSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGT 221

>sp|P58955|GR36A_DROME Putative gustatory receptor 36a
          Length = 391

 Score = 28.9 bits (63), Expect = 9.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -2

Query: 452 HMA*MHNYVKMLLFQRTYHHLLLLEQRTVVHKS 354
           +MA   +Y+ ++LF R Y+HLL  E R  +H+S
Sbjct: 173 NMAISQHYL-VILFVRAYYHLLKTEVRQAIHES 204

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,622,428
Number of Sequences: 369166
Number of extensions: 1640036
Number of successful extensions: 4290
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4283
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00378

Planaria EST Database

DrC_00378

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail