Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_J04
(508 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B 33 0.50
sp|O94874|K0776_HUMAN Protein KIAA0776 31 1.5
sp|P17629|HPR1_YEAST Protein HPR1 30 3.2
sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1... 29 5.5
sp|P58955|GR36A_DROME Putative gustatory receptor 36a 29 7.2
sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178 28 9.4
sp|P56347|DNE1_CHLVU DNA endonuclease I-CvuI (23S rRNA intr... 28 9.4
>sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B
Length = 89
Score = 32.7 bits (73), Expect = 0.50
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 336 YSCSSNVQWFIRACVSSNNSIMW 268
Y S+ + W IR+CV++N S+MW
Sbjct: 16 YDASAQMGWVIRSCVATNKSMMW 38
>sp|O94874|K0776_HUMAN Protein KIAA0776
Length = 794
Score = 31.2 bits (69), Expect = 1.5
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 119 LEKQKSDIPQDFFLMLAEKIIF-LNMRYFVILEYVFGEMNMSGNGWGMGQYHIMLLLEDT 295
L K D P++F LAE +I LN Y ++ VF S +G G + I L E+
Sbjct: 486 LRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGR-KRTIKDLQEEV 544
Query: 296 QALMNHCTLLEQ 331
L N+ L E+
Sbjct: 545 SNLYNNIRLFEK 556
>sp|P17629|HPR1_YEAST Protein HPR1
Length = 752
Score = 30.0 bits (66), Expect = 3.2
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = -2
Query: 192 ILRNIIFSASIRK--KSC-----GMSDFCFSNCNITTSSRSYNV*SRICLNSIMRYLSI 37
++RN+I S R KSC +SD F N + R N+ S IC N ++++ I
Sbjct: 408 LIRNLISSDETRNFYKSCYLRENPLSDIDFENLDEVNKKRGLNLCSYICDNRVLKFYKI 466
>sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1742.01 in chromosome III
precursor
Length = 1563
Score = 29.3 bits (64), Expect = 5.5
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 362 TFPTHISPLTLARATYSGS*ELVC-PPTTALCGTAPFPIHCQTYSFPQTRTPVSQST 195
T T +P T+ T SGS C PPTT L T P T +P + T T
Sbjct: 165 TTSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGT 221
>sp|P58955|GR36A_DROME Putative gustatory receptor 36a
Length = 391
Score = 28.9 bits (63), Expect = 7.2
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 397 HMA*MHNYVKMLLFQRTYHHLLLLEQRTVVHKS 299
+MA +Y+ ++LF R Y+HLL E R +H+S
Sbjct: 173 NMAISQHYL-VILFVRAYYHLLKTEVRQAIHES 204
>sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178
Length = 615
Score = 28.5 bits (62), Expect = 9.4
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 142 STGFFPYAGREDNIPQYEVLCDTGVRVWGNEYVWQWMGNGAVPH 273
++ FFP + VLC GV W +W GN PH
Sbjct: 139 ASAFFP-----SPFDEAAVLCMDGVGEWATTSLWSGQGNQLTPH 177
>sp|P56347|DNE1_CHLVU DNA endonuclease I-CvuI (23S rRNA intron protein)
Length = 161
Score = 28.5 bits (62), Expect = 9.4
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = -2
Query: 231 ISPNTYSSITKYLIL---RNIIFSASIRKKSCGMSDFC 127
+S + S T++ IL + I+ ++RK++ GMS+FC
Sbjct: 43 VSLTVFQSTTRHFILLDIQKILGCGTVRKRNDGMSEFC 80
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,506,365
Number of Sequences: 369166
Number of extensions: 1459083
Number of successful extensions: 3813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3806
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)