Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_N11
(532 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B 33 0.56
sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178 31 2.1
sp|O04093|RP8L1_ARATH Putative disease resistance protein R... 30 4.8
sp|Q9W539|HR4_DROME Hormone receptor 4 (dHR4) 29 6.2
sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1... 29 6.2
sp|P58955|GR36A_DROME Putative gustatory receptor 36a 29 8.1
>sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B
Length = 89
Score = 32.7 bits (73), Expect = 0.56
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 365 YSCSSNVQWFIRACVSSNNSIMW 297
Y S+ + W IR+CV++N S+MW
Sbjct: 16 YDASAQMGWVIRSCVATNKSMMW 38
>sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178
Length = 615
Score = 30.8 bits (68), Expect = 2.1
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +3
Query: 123 RELVVMLQLEKQKSDIPQDFFPYAGREDNIPQYEVLCDTGVRVWGNEYVWQWMGNGAVPH 302
++L +L E +S FFP + VLC GV W +W GN PH
Sbjct: 123 KDLPPLLFNEHHQSHAASAFFP-----SPFDEAAVLCMDGVGEWATTSLWSGQGNQLTPH 177
>sp|O04093|RP8L1_ARATH Putative disease resistance protein RPP8-like protein 1
Length = 821
Score = 29.6 bits (65), Expect = 4.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 288 HSPSIARHIHFPKHVLQYHKVPHIEEYYLLCQHKEKNPV 172
H + IH P+ QY PH+ YL C E++P+
Sbjct: 723 HLKELELAIHMPRFPDQYLFHPHLSHIYLWCCSMEEDPI 761
>sp|Q9W539|HR4_DROME Hormone receptor 4 (dHR4)
Length = 1518
Score = 29.3 bits (64), Expect = 6.2
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -2
Query: 393 LLFQRTYHHLLLLEQRTVVHKSLCVLQQQHYVVLPHSPSIARHIHFPKHVLQYHKVPHIE 214
LL Q H L Q+ +H + QQQ H + H P +++ K P++
Sbjct: 484 LLSQSMQH----LTQQQAIHLHHLLGQQQQQQQASHPQQQQQQQHSPHSLVRVKKEPNVG 539
Query: 213 EYYLLCQHKEKNPV 172
+ +L H++++P+
Sbjct: 540 QRHLSPHHQQQSPL 553
>sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1742.01 in chromosome III
precursor
Length = 1563
Score = 29.3 bits (64), Expect = 6.2
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -1
Query: 391 TFPTHISPLTLARATYSGS*ELVC-PPTTALCGTAPFPIHCQTYSFPQTRTPVSQST 224
T T +P T+ T SGS C PPTT L T P T +P + T T
Sbjct: 165 TTSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGT 221
>sp|P58955|GR36A_DROME Putative gustatory receptor 36a
Length = 391
Score = 28.9 bits (63), Expect = 8.1
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 426 HMA*MHNYVKMLLFQRTYHHLLLLEQRTVVHKS 328
+MA +Y+ ++LF R Y+HLL E R +H+S
Sbjct: 173 NMAISQHYL-VILFVRAYYHLLKTEVRQAIHES 204
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,266,459
Number of Sequences: 369166
Number of extensions: 1552792
Number of successful extensions: 4041
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4037
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)