Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_J03
(498 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B 33 0.49
sp|P31677|OTSA_ECOLI Alpha,alpha-trehalose-phosphate syntha... 29 5.4
sp|Q8XCE7|OTSA_ECO57 Alpha,alpha-trehalose-phosphate syntha... 29 5.4
sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1... 29 5.4
sp|P58955|GR36A_DROME Putative gustatory receptor 36a 29 7.0
sp|Q03096|EST3_YEAST Telomere replication protein EST3 (Eve... 29 7.0
sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178 28 9.2
>sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B
Length = 89
Score = 32.7 bits (73), Expect = 0.49
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 328 YSCSSNVQWFIRACVSSNNSIMW 260
Y S+ + W IR+CV++N S+MW
Sbjct: 16 YDASAQMGWVIRSCVATNKSMMW 38
>sp|P31677|OTSA_ECOLI Alpha,alpha-trehalose-phosphate synthase [UDP-forming]
(Trehalose-6-phosphate synthase)
(UDP-glucose-glucosephosphate glucosyltransferase)
Length = 474
Score = 29.3 bits (64), Expect = 5.4
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 277 NNSIMWYCPIPHPLPDIFISPNTYSSITKYLILRNIIFFASIRKKSCGMSDFCFSN-CNI 101
NN I ++ IP P P+IF + TY ++ + L +++ F + + + C SN +
Sbjct: 147 NNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLD--CLSNLTRV 204
Query: 100 TTSS 89
TT S
Sbjct: 205 TTRS 208
>sp|Q8XCE7|OTSA_ECO57 Alpha,alpha-trehalose-phosphate synthase [UDP-forming]
(Trehalose-6-phosphate synthase)
(UDP-glucose-glucosephosphate glucosyltransferase)
Length = 474
Score = 29.3 bits (64), Expect = 5.4
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 277 NNSIMWYCPIPHPLPDIFISPNTYSSITKYLILRNIIFFASIRKKSCGMSDFCFSN-CNI 101
NN I ++ IP P P+IF + TY ++ + L +++ F + + + C SN +
Sbjct: 147 NNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLD--CLSNLTRV 204
Query: 100 TTSS 89
TT S
Sbjct: 205 TTRS 208
>sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1742.01 in chromosome III
precursor
Length = 1563
Score = 29.3 bits (64), Expect = 5.4
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -1
Query: 354 TFPTHISPLTLARATYSGS*ELVC-PPTTALCGTAPFPIHCQTYSFPQTRTPVSQST 187
T T +P T+ T SGS C PPTT L T P T +P + T T
Sbjct: 165 TTSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGT 221
>sp|P58955|GR36A_DROME Putative gustatory receptor 36a
Length = 391
Score = 28.9 bits (63), Expect = 7.0
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 389 HMA*MHNYVKMLLFQRTYHHLLLLEQRTVVHKS 291
+MA +Y+ ++LF R Y+HLL E R +H+S
Sbjct: 173 NMAISQHYL-VILFVRAYYHLLKTEVRQAIHES 204
>sp|Q03096|EST3_YEAST Telomere replication protein EST3 (Ever shorter telomeres protein
3) [Contains: Telomere replication protein EST3 short
protein]
Length = 181
Score = 28.9 bits (63), Expect = 7.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Frame = -3
Query: 250 IPHPLPDIFISPNTYSSITKYLILRNIIFFASIRKKS----CGMSDFCFS------NCNI 101
+PH P I +P ++ ITK+ + + +ASIR S S C S NC I
Sbjct: 52 LPHMSPTILTNPCHFAKITKFYNVCDYKVYASIRDSSHQILVEFSQECVSNFERTHNCRI 111
Query: 100 TTSS 89
T+ +
Sbjct: 112 TSET 115
>sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178
Length = 615
Score = 28.5 bits (62), Expect = 9.2
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 134 STGFFPYAGKEDNIPQYEVLCDTGVRVWGNEYVWQWMGNGAVPH 265
++ FFP + VLC GV W +W GN PH
Sbjct: 139 ASAFFP-----SPFDEAAVLCMDGVGEWATTSLWSGQGNQLTPH 177
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,788,960
Number of Sequences: 369166
Number of extensions: 1445151
Number of successful extensions: 3756
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3749
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3119256630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)