Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_E17
(280 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17629|HPR1_YEAST Protein HPR1 30 1.7
sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178 28 5.0
sp|P56347|DNE1_CHLVU DNA endonuclease I-CvuI (23S rRNA intr... 28 5.0
sp|O94874|K0776_HUMAN Protein KIAA0776 28 6.6
sp|Q8NGX0|O11L1_HUMAN Olfactory receptor 11L1 28 6.6
>sp|P17629|HPR1_YEAST Protein HPR1
Length = 752
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = -2
Query: 183 ILRNIIFSASIRK--KSC-----GMSDFCFSNCNITTSSRSYNV*SRICLNSIMRYLSI 28
++RN+I S R KSC +SD F N + R N+ S IC N ++++ I
Sbjct: 408 LIRNLISSDETRNFYKSCYLRENPLSDIDFENLDEVNKKRGLNLCSYICDNRVLKFYKI 466
>sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178
Length = 615
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 133 STGFFPYAGREDNIPQYEVLCDTGVRVWGNEYVWQWMGNGAVPH 264
++ FFP + VLC GV W +W GN PH
Sbjct: 139 ASAFFP-----SPFDEAAVLCMDGVGEWATTSLWSGQGNQLTPH 177
>sp|P56347|DNE1_CHLVU DNA endonuclease I-CvuI (23S rRNA intron protein)
Length = 161
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = -2
Query: 222 ISPNTYSSITKYLIL---RNIIFSASIRKKSCGMSDFC 118
+S + S T++ IL + I+ ++RK++ GMS+FC
Sbjct: 43 VSLTVFQSTTRHFILLDIQKILGCGTVRKRNDGMSEFC 80
>sp|O94874|K0776_HUMAN Protein KIAA0776
Length = 794
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 110 LEKQKSDIPQDFFLMLAEKIIF-LNMRYFVILEYVFGEMNMSGNGWG 247
L K D P++F LAE +I LN Y ++ VF S +G G
Sbjct: 486 LRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTG 532
>sp|Q8NGX0|O11L1_HUMAN Olfactory receptor 11L1
Length = 322
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Frame = -2
Query: 264 MWYCPIPHPLPDIFISPNTYSSITKYLI------LRNIIFSASIRK---KSCGM 130
M+ CP PH LP+I + + ++ L+ LRN F ++RK + CG+
Sbjct: 258 MYVCPSPHLLPEINKIISVFYTVVTPLLNPVIYSLRNKDFKEAVRKVMRRKCGI 311
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,850,147
Number of Sequences: 369166
Number of extensions: 723965
Number of successful extensions: 1952
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1948
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)