Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_J05
(542 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B 33 0.58
sp|O94874|K0776_HUMAN Protein KIAA0776 31 1.7
sp|P17629|HPR1_YEAST Protein HPR1 30 3.8
sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1... 29 6.5
sp|P58955|GR36A_DROME Putative gustatory receptor 36a 29 8.4
sp|Q7X5K6|RNPA_THET8 Ribonuclease P protein component (RNas... 29 8.4
sp|Q7X5L2|RNPA_THEFI Ribonuclease P protein component (RNas... 29 8.4
sp|Q7X5L4|RNPA_THEAQ Ribonuclease P protein component (RNas... 29 8.4
>sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B
Length = 89
Score = 32.7 bits (73), Expect = 0.58
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 370 YSCSSNVQWFIRACVSSNNSIMW 302
Y S+ + W IR+CV++N S+MW
Sbjct: 16 YDASAQMGWVIRSCVATNKSMMW 38
>sp|O94874|K0776_HUMAN Protein KIAA0776
Length = 794
Score = 31.2 bits (69), Expect = 1.7
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 153 LEKQKSDIPQDFFLMLAEKIIF-LNMRYFVILEYVFGEMNMSGNGWGMGQYHIMLLLEDT 329
L K D P++F LAE +I LN Y ++ VF S +G G + I L E+
Sbjct: 486 LRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGR-KRTIKDLQEEV 544
Query: 330 QALMNHCTLLEQ 365
L N+ L E+
Sbjct: 545 SNLYNNIRLFEK 556
>sp|P17629|HPR1_YEAST Protein HPR1
Length = 752
Score = 30.0 bits (66), Expect = 3.8
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = -2
Query: 226 ILRNIIFSASIRK--KSC-----GMSDFCFSNCNITTSSRSYNV*SRICLNSIMRYLSI 71
++RN+I S R KSC +SD F N + R N+ S IC N ++++ I
Sbjct: 408 LIRNLISSDETRNFYKSCYLRENPLSDIDFENLDEVNKKRGLNLCSYICDNRVLKFYKI 466
>sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1742.01 in chromosome III
precursor
Length = 1563
Score = 29.3 bits (64), Expect = 6.5
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 396 TFPTHISPLTLARATYSGS*ELVC-PPTTALCGTAPFPIHCQTYSFPQTRTPVSQST 229
T T +P T+ T SGS C PPTT L T P T +P + T T
Sbjct: 165 TTSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGT 221
>sp|P58955|GR36A_DROME Putative gustatory receptor 36a
Length = 391
Score = 28.9 bits (63), Expect = 8.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 431 HMA*MHNYVKMLLFQRTYHHLLLLEQRTVVHKS 333
+MA +Y+ ++LF R Y+HLL E R +H+S
Sbjct: 173 NMAISQHYL-VILFVRAYYHLLKTEVRQAIHES 204
>sp|Q7X5K6|RNPA_THET8 Ribonuclease P protein component (RNaseP protein) (RNase P protein)
(Protein C5)
sp|Q72LI2|RNPA_THET2 Ribonuclease P protein component (RNaseP protein) (RNase P protein)
(Protein C5)
Length = 163
Score = 28.9 bits (63), Expect = 8.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 17 RGRAGNGRQISLSWLP 64
+GRAG GR +S+ WLP
Sbjct: 76 KGRAGRGRYVSVKWLP 91
>sp|Q7X5L2|RNPA_THEFI Ribonuclease P protein component (RNaseP protein) (RNase P protein)
(Protein C5)
Length = 240
Score = 28.9 bits (63), Expect = 8.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 17 RGRAGNGRQISLSWLPGQYGQVPHNAIQADPGLYIVR 127
+GR+G GR + + WLP Q G + G +VR
Sbjct: 152 KGRSGRGRLVLVRWLPRQEGVAVGIVVSKKVGKAVVR 188
>sp|Q7X5L4|RNPA_THEAQ Ribonuclease P protein component (RNaseP protein) (RNase P protein)
(Protein C5)
Length = 162
Score = 28.9 bits (63), Expect = 8.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 17 RGRAGNGRQISLSWLPGQYGQV 82
+GRAG GR +S+ WLP +V
Sbjct: 75 KGRAGRGRFVSVKWLPAPEARV 96
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,602,145
Number of Sequences: 369166
Number of extensions: 1585211
Number of successful extensions: 4149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4142
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)