Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_H06
(235 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B 33 0.27
sp|P58955|GR36A_DROME Putative gustatory receptor 36a 29 3.9
sp|Q9H0J9|ZCC1_HUMAN Zinc finger CCCH type domain containin... 28 8.7
sp|P27398|CAND_DROME Calpain D (Calcium-activated neutral p... 28 8.7
>sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B
Length = 89
Score = 32.7 bits (73), Expect = 0.27
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 91 YSCSSNVQWFIRACVSSNNSIMW 23
Y S+ + W IR+CV++N S+MW
Sbjct: 16 YDASAQMGWVIRSCVATNKSMMW 38
>sp|P58955|GR36A_DROME Putative gustatory receptor 36a
Length = 391
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -3
Query: 152 HMA*MHNYVKMLLFQRTYHHLLLLEQRTVVHKS 54
+MA +Y+ ++LF R Y+HLL E R +H+S
Sbjct: 173 NMAISQHYL-VILFVRAYYHLLKTEVRQAIHES 204
>sp|Q9H0J9|ZCC1_HUMAN Zinc finger CCCH type domain containing protein 1
Length = 701
Score = 27.7 bits (60), Expect = 8.7
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 8 GNGAVPHNAVVGGHTSSYEPLYVARARV-SGDMCVGKVASSHNCAFMPYG 154
G A P V+ PL + RA S CVG A H C FM YG
Sbjct: 57 GAAAAPERVVLAA-----SPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYG 101
>sp|P27398|CAND_DROME Calpain D (Calcium-activated neutral proteinase D) (CANP D) (Small
optic lobes protein)
Length = 1594
Score = 27.7 bits (60), Expect = 8.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 76 NVQWFIRACVSSNNSIMWYCPI 11
N +W AC + N+S+ W+C I
Sbjct: 136 NRRWVCHACGTDNSSVTWHCLI 157
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,112,643
Number of Sequences: 369166
Number of extensions: 568625
Number of successful extensions: 1458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 68,354,980
effective HSP length: 48
effective length of database: 59,487,700
effective search space used: 1725143300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)