Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_E01
(362 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B 33 0.27
sp|O94874|K0776_HUMAN Protein KIAA0776 31 0.78
sp|Q13118|KLF10_HUMAN Transforming growth factor-beta-induc... 30 1.7
sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1... 30 2.3
sp|Q51WZ9|ATG9_MAGGR Autophagy-related protein 9 29 3.0
sp|P58955|GR36A_DROME Putative gustatory receptor 36a 29 3.9
sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178 28 5.1
sp|P56347|DNE1_CHLVU DNA endonuclease I-CvuI (23S rRNA intr... 28 5.1
sp|Q8NGX0|O11L1_HUMAN Olfactory receptor 11L1 28 6.6
sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)... 28 6.6
>sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B
Length = 89
Score = 32.7 bits (73), Expect = 0.27
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 234 YSCSSNVQWFIRACVSSNNSIMW 166
Y S+ + W IR+CV++N S+MW
Sbjct: 16 YDASAQMGWVIRSCVATNKSMMW 38
>sp|O94874|K0776_HUMAN Protein KIAA0776
Length = 794
Score = 31.2 bits (69), Expect = 0.78
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 17 LEKQKSDIPQDFFLMLAEKIIF-LNMRYFVILEYVFGEMNMSGNGWGMGQYHIMLLLEDT 193
L K D P++F LAE +I LN Y ++ VF S +G G + I L E+
Sbjct: 486 LRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGR-KRTIKDLQEEV 544
Query: 194 QALMNHCTLLEQ 229
L N+ L E+
Sbjct: 545 SNLYNNIRLFEK 556
>sp|Q13118|KLF10_HUMAN Transforming growth factor-beta-inducible early growth response
protein 1 (TGFB-inducible early growth response protein
1) (TIEG-1) (Krueppel-like factor 10) (EGRalpha)
Length = 480
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -1
Query: 197 LVCPPTTALCGTAPFPIHCQTYSFPQTRTPVSQSTSY*GILSSLPA*GKNPVECPTFVF 21
LV PP + G P P+ CQ P V+ ++ S P + P CP VF
Sbjct: 256 LVSPPAVSAGGVPPMPVICQMVPLPANNPVVTT------VVPSTPP-SQPPAVCPPVVF 307
>sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1742.01 in chromosome III
precursor
Length = 1563
Score = 29.6 bits (65), Expect = 2.3
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Frame = -1
Query: 260 TFPTHISPLTLARATYSGS*ELVC-PPTTALCGTAPFPIHCQTYSFPQTRTPVSQSTSY* 84
T T +P T+ T SGS C PPTT L T P T +P + T T
Sbjct: 165 TTSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGTPSN 224
Query: 83 GILSSLPA*GKNPVECPT---FVFPTVTS 6
G + + VE PT + + T+T+
Sbjct: 225 GTVI-------DTVEVPTTTNYGYTTITT 246
>sp|Q51WZ9|ATG9_MAGGR Autophagy-related protein 9
Length = 917
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -2
Query: 193 CVLQQQHYVVLPHSPSIARHIHFPKHVLQYHKVPH---IEEYYL-LCQHKEKILWNVRLL 26
C++ Q+ + L ++ +A + F + YHK+PH +E+ + C ++WNV L
Sbjct: 221 CIIVQR-ILELVNAAFVAVFLTFLSQCVDYHKLPHSKKMEDIIIPKCTQNMSLVWNVGLW 279
Query: 25 FFQL 14
F +
Sbjct: 280 LFAI 283
>sp|P58955|GR36A_DROME Putative gustatory receptor 36a
Length = 391
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 295 HMA*MHNYVKMLLFQRTYHHLLLLEQRTVVHKS 197
+MA +Y+ ++LF R Y+HLL E R +H+S
Sbjct: 173 NMAISQHYL-VILFVRAYYHLLKTEVRQAIHES 204
>sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178
Length = 615
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 40 STGFFPYAGREDNIPQYEVLCDTGVRVWGNEYVWQWMGNGAVPH 171
++ FFP + VLC GV W +W GN PH
Sbjct: 139 ASAFFP-----SPFDEAAVLCMDGVGEWATTSLWSGQGNQLTPH 177
>sp|P56347|DNE1_CHLVU DNA endonuclease I-CvuI (23S rRNA intron protein)
Length = 161
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = -3
Query: 129 ISPNTYSSITKYLIL---RNIIFSASIRKKSCGMSDFC 25
+S + S T++ IL + I+ ++RK++ GMS+FC
Sbjct: 43 VSLTVFQSTTRHFILLDIQKILGCGTVRKRNDGMSEFC 80
>sp|Q8NGX0|O11L1_HUMAN Olfactory receptor 11L1
Length = 322
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Frame = -3
Query: 171 MWYCPIPHPLPDIFISPNTYSSITKYLI------LRNIIFSASIRK---KSCGM 37
M+ CP PH LP+I + + ++ L+ LRN F ++RK + CG+
Sbjct: 258 MYVCPSPHLLPEINKIISVFYTVVTPLLNPVIYSLRNKDFKEAVRKVMRRKCGI 311
>sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
Length = 436
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = -2
Query: 235 LLLLEQRTVVHKSLCVLQQQHYVVLPHSPSIARHIHFPKHVLQYHK 98
LLLLEQ+ + + + + P+ P+++ H++F H+++ +K
Sbjct: 258 LLLLEQQNITKSFIFIQNIIKGINNPYKPNLSWHLNFEWHLIKDYK 303
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,433,123
Number of Sequences: 369166
Number of extensions: 1162012
Number of successful extensions: 3278
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3272
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)