Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_B20
(352 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B 33 0.26
sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1... 29 2.9
sp|P58955|GR36A_DROME Putative gustatory receptor 36a 29 3.8
sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178 28 6.5
sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)... 28 6.5
sp|P22017|B3_USTMA Mating-type locus allele B3 protein 28 6.5
sp|Q9H0J9|ZCC1_HUMAN Zinc finger CCCH type domain containin... 28 8.5
sp|P31677|OTSA_ECOLI Alpha,alpha-trehalose-phosphate syntha... 28 8.5
sp|Q99558|M3K14_HUMAN Mitogen-activated protein kinase kina... 28 8.5
sp|P27398|CAND_DROME Calpain D (Calcium-activated neutral p... 28 8.5
>sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B
Length = 89
Score = 32.7 bits (73), Expect = 0.26
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 185 YSCSSNVQWFIRACVSSNNSIMW 117
Y S+ + W IR+CV++N S+MW
Sbjct: 16 YDASAQMGWVIRSCVATNKSMMW 38
>sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1742.01 in chromosome III
precursor
Length = 1563
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -1
Query: 211 TFPTHISPLTLARATYSGS*ELVC-PPTTALCGTAPFPIHCQTYSFPQTRTPVSQST 44
T T +P T+ T SGS C PPTT L T P T +P + T T
Sbjct: 165 TTSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGT 221
>sp|P58955|GR36A_DROME Putative gustatory receptor 36a
Length = 391
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 246 HMA*MHNYVKMLLFQRTYHHLLLLEQRTVVHKS 148
+MA +Y+ ++LF R Y+HLL E R +H+S
Sbjct: 173 NMAISQHYL-VILFVRAYYHLLKTEVRQAIHES 204
>sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178
Length = 615
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 45 VLCDTGVRVWGNEYVWQWMGNGAVPH 122
VLC GV W +W GN PH
Sbjct: 152 VLCMDGVGEWATTSLWSGQGNQLTPH 177
>sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
Length = 436
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = -2
Query: 186 LLLLEQRTVVHKSLCVLQQQHYVVLPHSPSIARHIHFPKHVLQYHK 49
LLLLEQ+ + + + + P+ P+++ H++F H+++ +K
Sbjct: 258 LLLLEQQNITKSFIFIQNIIKGINNPYKPNLSWHLNFEWHLIKDYK 303
>sp|P22017|B3_USTMA Mating-type locus allele B3 protein
Length = 410
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 177 LEQRTVVHKSLCVLQQQ---HYVVLPHSPSIARHIHFPKH 67
+E R V+ + L LQQ+ H LPH P + + IH H
Sbjct: 28 VEHRPVLVRKLQELQQKTPKHVAKLPHEPEMIQQIHQAAH 67
>sp|Q9H0J9|ZCC1_HUMAN Zinc finger CCCH type domain containing protein 1
Length = 701
Score = 27.7 bits (60), Expect = 8.5
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +3
Query: 102 GNGAVPHNAVVGGHTSSYEPLYVARARV-SGDMCVGKVASSHNCAFMPYG 248
G A P V+ PL + RA S CVG A H C FM YG
Sbjct: 57 GAAAAPERVVLAA-----SPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYG 101
>sp|P31677|OTSA_ECOLI Alpha,alpha-trehalose-phosphate synthase [UDP-forming]
(Trehalose-6-phosphate synthase)
(UDP-glucose-glucosephosphate glucosyltransferase)
Length = 474
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 134 NNSIMWYCPIPHPLPDIFISPNTYSSITKYLILRNIIFF 18
NN I ++ IP P P+IF + TY ++ + L +++ F
Sbjct: 147 NNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGF 185
>sp|Q99558|M3K14_HUMAN Mitogen-activated protein kinase kinase kinase 14 (NF-kappa
beta-inducing kinase) (Serine/threonine-protein kinase
NIK) (HsNIK)
Length = 947
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 168 RTVVHKSLCVLQQQHYVVLPHSPSIARHIHFPKHVLQYHKVPH 40
R+ +HK + LQ ++V H P + P H Y ++PH
Sbjct: 223 RSELHKLISPLQCLNHVWKLHHPQDGGPLPLPTHPFPYSRLPH 265
>sp|P27398|CAND_DROME Calpain D (Calcium-activated neutral proteinase D) (CANP D) (Small
optic lobes protein)
Length = 1594
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 170 NVQWFIRACVSSNNSIMWYCPI 105
N +W AC + N+S+ W+C I
Sbjct: 136 NRRWVCHACGTDNSSVTWHCLI 157
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,298,288
Number of Sequences: 369166
Number of extensions: 1034998
Number of successful extensions: 2930
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2926
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)