Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_M01
(398 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B 33 0.27
sp|O94874|K0776_HUMAN Protein KIAA0776 31 0.78
sp|P17629|HPR1_YEAST Protein HPR1 30 1.7
sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1... 29 3.0
sp|P58955|GR36A_DROME Putative gustatory receptor 36a 29 3.9
sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178 28 5.0
sp|P56347|DNE1_CHLVU DNA endonuclease I-CvuI (23S rRNA intr... 28 5.0
sp|Q8NGX0|O11L1_HUMAN Olfactory receptor 11L1 28 6.6
sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)... 28 6.6
sp|P22017|B3_USTMA Mating-type locus allele B3 protein 28 6.6
>sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B
Length = 89
Score = 32.7 bits (73), Expect = 0.27
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 326 YSCSSNVQWFIRACVSSNNSIMW 258
Y S+ + W IR+CV++N S+MW
Sbjct: 16 YDASAQMGWVIRSCVATNKSMMW 38
>sp|O94874|K0776_HUMAN Protein KIAA0776
Length = 794
Score = 31.2 bits (69), Expect = 0.78
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 109 LEKQKSDIPQDFFLMLAEKIIF-LNMRYFVILEYVFGEMNMSGNGWGMGQYHIMLLLEDT 285
L K D P++F LAE +I LN Y ++ VF S +G G + I L E+
Sbjct: 486 LRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGR-KRTIKDLQEEV 544
Query: 286 QALMNHCTLLEQ 321
L N+ L E+
Sbjct: 545 SNLYNNIRLFEK 556
>sp|P17629|HPR1_YEAST Protein HPR1
Length = 752
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = -1
Query: 182 ILRNIIFSASIRK--KSC-----GMSDFCFSNCNITTSSRSYNV*SRICLNSIMRYLSI 27
++RN+I S R KSC +SD F N + R N+ S IC N ++++ I
Sbjct: 408 LIRNLISSDETRNFYKSCYLRENPLSDIDFENLDEVNKKRGLNLCSYICDNRVLKFYKI 466
>sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1742.01 in chromosome III
precursor
Length = 1563
Score = 29.3 bits (64), Expect = 3.0
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -2
Query: 352 TFPTHISPLTLARATYSGS*ELVC-PPTTALCGTAPFPIHCQTYSFPQTRTPVSQST 185
T T +P T+ T SGS C PPTT L T P T +P + T T
Sbjct: 165 TTSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGT 221
>sp|P58955|GR36A_DROME Putative gustatory receptor 36a
Length = 391
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -3
Query: 387 HMA*MHNYVKMLLFQRTYHHLLLLEQRTVVHKS 289
+MA +Y+ ++LF R Y+HLL E R +H+S
Sbjct: 173 NMAISQHYL-VILFVRAYYHLLKTEVRQAIHES 204
>sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178
Length = 615
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +3
Query: 132 STGFFPYAGREDNIPQYEVLCDTGVRVWGNEYVWQWMGNGAVPH 263
++ FFP + VLC GV W +W GN PH
Sbjct: 139 ASAFFP-----SPFDEAAVLCMDGVGEWATTSLWSGQGNQLTPH 177
>sp|P56347|DNE1_CHLVU DNA endonuclease I-CvuI (23S rRNA intron protein)
Length = 161
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = -1
Query: 221 ISPNTYSSITKYLIL---RNIIFSASIRKKSCGMSDFC 117
+S + S T++ IL + I+ ++RK++ GMS+FC
Sbjct: 43 VSLTVFQSTTRHFILLDIQKILGCGTVRKRNDGMSEFC 80
>sp|Q8NGX0|O11L1_HUMAN Olfactory receptor 11L1
Length = 322
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Frame = -1
Query: 263 MWYCPIPHPLPDIFISPNTYSSITKYLI------LRNIIFSASIRK---KSCGM 129
M+ CP PH LP+I + + ++ L+ LRN F ++RK + CG+
Sbjct: 258 MYVCPSPHLLPEINKIISVFYTVVTPLLNPVIYSLRNKDFKEAVRKVMRRKCGI 311
>sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
Length = 436
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = -3
Query: 327 LLLLEQRTVVHKSLCVLQQQHYVVLPHSPSIARHIHFPKHVLQYHK 190
LLLLEQ+ + + + + P+ P+++ H++F H+++ +K
Sbjct: 258 LLLLEQQNITKSFIFIQNIIKGINNPYKPNLSWHLNFEWHLIKDYK 303
>sp|P22017|B3_USTMA Mating-type locus allele B3 protein
Length = 410
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 318 LEQRTVVHKSLCVLQQQ---HYVVLPHSPSIARHIHFPKH 208
+E R V+ + L LQQ+ H LPH P + + IH H
Sbjct: 28 VEHRPVLVRKLQELQQKTPKHVAKLPHEPEMIQQIHQAAH 67
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,561,956
Number of Sequences: 369166
Number of extensions: 1211882
Number of successful extensions: 3230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3223
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)