Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_G12
(392 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B 33 0.27
sp|O94874|K0776_HUMAN Protein KIAA0776 31 0.78
sp|Q13118|KLF10_HUMAN Transforming growth factor-beta-induc... 30 1.7
sp|P79845|CRVP_TRIMU Cysteine-rich venom protein precursor ... 30 2.3
sp|Q51WZ9|ATG9_MAGGR Autophagy-related protein 9 29 3.0
sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1... 29 3.0
sp|P58955|GR36A_DROME Putative gustatory receptor 36a 29 3.9
sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178 28 5.1
sp|P56347|DNE1_CHLVU DNA endonuclease I-CvuI (23S rRNA intr... 28 5.1
sp|Q7M523|1A1D_WILSA 1-aminocyclopropane-1-carboxylate deam... 28 5.1
>sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B
Length = 89
Score = 32.7 bits (73), Expect = 0.27
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 225 YSCSSNVQWFIRACVSSNNSIMW 157
Y S+ + W IR+CV++N S+MW
Sbjct: 16 YDASAQMGWVIRSCVATNKSMMW 38
>sp|O94874|K0776_HUMAN Protein KIAA0776
Length = 794
Score = 31.2 bits (69), Expect = 0.78
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 8 LEKQKSDIPQDFFLMLAEKIIF-LNMRYFVILEYVFGEMNMSGNGWGMGQYHIMLLLEDT 184
L K D P++F LAE +I LN Y ++ VF S +G G + I L E+
Sbjct: 486 LRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGR-KRTIKDLQEEV 544
Query: 185 QALMNHCTLLEQ 220
L N+ L E+
Sbjct: 545 SNLYNNIRLFEK 556
>sp|Q13118|KLF10_HUMAN Transforming growth factor-beta-inducible early growth response
protein 1 (TGFB-inducible early growth response protein
1) (TIEG-1) (Krueppel-like factor 10) (EGRalpha)
Length = 480
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -1
Query: 188 LVCPPTTALCGTAPFPIHCQTYSFPQTRTPVSQSTSY*GILSSLPA*GKNPVECPTFVF 12
LV PP + G P P+ CQ P V+ ++ S P + P CP VF
Sbjct: 256 LVSPPAVSAGGVPPMPVICQMVPLPANNPVVTT------VVPSTPP-SQPPAVCPPVVF 307
>sp|P79845|CRVP_TRIMU Cysteine-rich venom protein precursor (TM-CRVP)
Length = 240
Score = 29.6 bits (65), Expect = 2.3
Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 19/105 (18%)
Frame = +1
Query: 7 VGKTKVGHSTGFFPYAGREDNIPQYEVLCDTGVRVWGNEYVWQWMGNGAVPHNAVVGGHT 186
+G K G + PY + +I + W EY G GAVP NA G +T
Sbjct: 87 IGGIKCGENIYMSPYPAKWTDI----------IHAWHGEYKDFKYGVGAVPSNAATGHYT 136
Query: 187 -------------------SSYEPLYVARARVSGDMCVGKVASSH 264
S Y YV + +G+M +GK A+ +
Sbjct: 137 QIVWYKSYRGGCAAAYCPSSKYRYFYVCQYCPAGNM-IGKTATPY 180
>sp|Q51WZ9|ATG9_MAGGR Autophagy-related protein 9
Length = 917
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -2
Query: 184 CVLQQQHYVVLPHSPSIARHIHFPKHVLQYHKVPH---IEEYYL-LCQHKEKILWNVRLL 17
C++ Q+ + L ++ +A + F + YHK+PH +E+ + C ++WNV L
Sbjct: 221 CIIVQR-ILELVNAAFVAVFLTFLSQCVDYHKLPHSKKMEDIIIPKCTQNMSLVWNVGLW 279
Query: 16 FFQL 5
F +
Sbjct: 280 LFAI 283
>sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1742.01 in chromosome III
precursor
Length = 1563
Score = 29.3 bits (64), Expect = 3.0
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -1
Query: 251 TFPTHISPLTLARATYSGS*ELVC-PPTTALCGTAPFPIHCQTYSFPQTRTPVSQST 84
T T +P T+ T SGS C PPTT L T P T +P + T T
Sbjct: 165 TTSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGT 221
>sp|P58955|GR36A_DROME Putative gustatory receptor 36a
Length = 391
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 286 HMA*MHNYVKMLLFQRTYHHLLLLEQRTVVHKS 188
+MA +Y+ ++LF R Y+HLL E R +H+S
Sbjct: 173 NMAISQHYL-VILFVRAYYHLLKTEVRQAIHES 204
>sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178
Length = 615
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 31 STGFFPYAGREDNIPQYEVLCDTGVRVWGNEYVWQWMGNGAVPH 162
++ FFP + VLC GV W +W GN PH
Sbjct: 139 ASAFFP-----SPFDEAAVLCMDGVGEWATTSLWSGQGNQLTPH 177
>sp|P56347|DNE1_CHLVU DNA endonuclease I-CvuI (23S rRNA intron protein)
Length = 161
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = -3
Query: 120 ISPNTYSSITKYLIL---RNIIFSASIRKKSCGMSDFC 16
+S + S T++ IL + I+ ++RK++ GMS+FC
Sbjct: 43 VSLTVFQSTTRHFILLDIQKILGCGTVRKRNDGMSEFC 80
>sp|Q7M523|1A1D_WILSA 1-aminocyclopropane-1-carboxylate deaminase (ACC deaminase) (ACCD)
Length = 341
Score = 28.5 bits (62), Expect = 5.1
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +1
Query: 1 VTVGKTKVGHSTGFFPYAGREDNIPQYEVLCDTGVRVWGN-----EYVWQWMGNGAVPHN 165
+T G + + + + G + N+ C++G+ GN EY+ + G H
Sbjct: 11 LTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHL 70
Query: 166 AVVGGHTSSYEPLYVARARVSGDMCV 243
+GG S+ + A A G CV
Sbjct: 71 VSIGGRQSNQTRMVAALAAKLGKKCV 96
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.135 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,766,365
Number of Sequences: 369166
Number of extensions: 1212141
Number of successful extensions: 3363
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3357
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)