Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_F07
(378 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B 33 0.26
sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1... 29 2.9
sp|P58955|GR36A_DROME Putative gustatory receptor 36a 29 3.8
sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178 28 5.0
sp|P56347|DNE1_CHLVU DNA endonuclease I-CvuI (23S rRNA intr... 28 5.0
sp|Q8NGX0|O11L1_HUMAN Olfactory receptor 11L1 28 6.5
sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)... 28 6.5
sp|P22017|B3_USTMA Mating-type locus allele B3 protein 28 6.5
sp|Q9H0J9|ZCC1_HUMAN Zinc finger CCCH type domain containin... 28 8.5
sp|Q13118|KLF10_HUMAN Transforming growth factor-beta-induc... 28 8.5
>sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B
Length = 89
Score = 32.7 bits (73), Expect = 0.26
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 211 YSCSSNVQWFIRACVSSNNSIMW 143
Y S+ + W IR+CV++N S+MW
Sbjct: 16 YDASAQMGWVIRSCVATNKSMMW 38
>sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1742.01 in chromosome III
precursor
Length = 1563
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -1
Query: 237 TFPTHISPLTLARATYSGS*ELVC-PPTTALCGTAPFPIHCQTYSFPQTRTPVSQST 70
T T +P T+ T SGS C PPTT L T P T +P + T T
Sbjct: 165 TTSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGT 221
>sp|P58955|GR36A_DROME Putative gustatory receptor 36a
Length = 391
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 272 HMA*MHNYVKMLLFQRTYHHLLLLEQRTVVHKS 174
+MA +Y+ ++LF R Y+HLL E R +H+S
Sbjct: 173 NMAISQHYL-VILFVRAYYHLLKTEVRQAIHES 204
>sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178
Length = 615
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 17 STGFFPYAGREDNIPQYEVLCDTGVRVWGNEYVWQWMGNGAVPH 148
++ FFP + VLC GV W +W GN PH
Sbjct: 139 ASAFFP-----SPFDEAAVLCMDGVGEWATTSLWSGQGNQLTPH 177
>sp|P56347|DNE1_CHLVU DNA endonuclease I-CvuI (23S rRNA intron protein)
Length = 161
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = -3
Query: 106 ISPNTYSSITKYLIL---RNIIFSASIRKKSCGMSDFC 2
+S + S T++ IL + I+ ++RK++ GMS+FC
Sbjct: 43 VSLTVFQSTTRHFILLDIQKILGCGTVRKRNDGMSEFC 80
>sp|Q8NGX0|O11L1_HUMAN Olfactory receptor 11L1
Length = 322
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Frame = -3
Query: 148 MWYCPIPHPLPDIFISPNTYSSITKYLI------LRNIIFSASIRK---KSCGM 14
M+ CP PH LP+I + + ++ L+ LRN F ++RK + CG+
Sbjct: 258 MYVCPSPHLLPEINKIISVFYTVVTPLLNPVIYSLRNKDFKEAVRKVMRRKCGI 311
>sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
Length = 436
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = -2
Query: 212 LLLLEQRTVVHKSLCVLQQQHYVVLPHSPSIARHIHFPKHVLQYHK 75
LLLLEQ+ + + + + P+ P+++ H++F H+++ +K
Sbjct: 258 LLLLEQQNITKSFIFIQNIIKGINNPYKPNLSWHLNFEWHLIKDYK 303
>sp|P22017|B3_USTMA Mating-type locus allele B3 protein
Length = 410
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 203 LEQRTVVHKSLCVLQQQ---HYVVLPHSPSIARHIHFPKH 93
+E R V+ + L LQQ+ H LPH P + + IH H
Sbjct: 28 VEHRPVLVRKLQELQQKTPKHVAKLPHEPEMIQQIHQAAH 67
>sp|Q9H0J9|ZCC1_HUMAN Zinc finger CCCH type domain containing protein 1
Length = 701
Score = 27.7 bits (60), Expect = 8.5
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 128 GNGAVPHNAVVGGHTSSYEPLYVARARV-SGDMCVGKVASSHNCAFMPYG 274
G A P V+ PL + RA S CVG A H C FM YG
Sbjct: 57 GAAAAPERVVLAA-----SPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYG 101
>sp|Q13118|KLF10_HUMAN Transforming growth factor-beta-inducible early growth response
protein 1 (TGFB-inducible early growth response protein
1) (TIEG-1) (Krueppel-like factor 10) (EGRalpha)
Length = 480
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = -1
Query: 174 LVCPPTTALCGTAPFPIHCQTYSFPQTRTPVSQSTSY*GILSSLPA*GKNPVECPTFV 1
LV PP + G P P+ CQ P V+ ++ S P + P CP V
Sbjct: 256 LVSPPAVSAGGVPPMPVICQMVPLPANNPVVTT------VVPSTPP-SQPPAVCPPVV 306
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,628,123
Number of Sequences: 369166
Number of extensions: 1157452
Number of successful extensions: 3188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3182
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)