Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_A24
(432 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B 33 0.34
sp|Q92359|YDHE_SCHPO Hypothetical protein C6G9.14 in chromo... 30 2.8
sp|P31677|OTSA_ECOLI Alpha,alpha-trehalose-phosphate syntha... 29 3.7
sp|Q8XCE7|OTSA_ECO57 Alpha,alpha-trehalose-phosphate syntha... 29 3.7
sp|Q13075|BIR1_HUMAN Baculoviral IAP repeat-containing prot... 29 4.8
sp|Q03096|EST3_YEAST Telomere replication protein EST3 (Eve... 29 4.8
sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178 28 6.3
sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1... 28 6.3
sp|P17629|HPR1_YEAST Protein HPR1 28 8.3
sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)... 28 8.3
>sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B
Length = 89
Score = 32.7 bits (73), Expect = 0.34
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 338 YSCSSNVQWFIRACVSSNNSIMW 270
Y S+ + W IR+CV++N S+MW
Sbjct: 16 YDASAQMGWVIRSCVATNKSMMW 38
>sp|Q92359|YDHE_SCHPO Hypothetical protein C6G9.14 in chromosome I
Length = 681
Score = 29.6 bits (65), Expect = 2.8
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -1
Query: 378 LCEDATFQRTYHHLLLLEQRTVVHKSLCVLQQQHYVVLPHSPSIARHIHFPKHVLQY 208
+CED T+ H + QR H S ++Q ++PH+ ++ + F +VLQY
Sbjct: 489 ICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHALTLVQDA-FGNYVLQY 544
>sp|P31677|OTSA_ECOLI Alpha,alpha-trehalose-phosphate synthase [UDP-forming]
(Trehalose-6-phosphate synthase)
(UDP-glucose-glucosephosphate glucosyltransferase)
Length = 474
Score = 29.3 bits (64), Expect = 3.7
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -2
Query: 287 NNSIMWYCPIPHPLPDIFISPNTYSSITKYLILRNIIFFASIRKKSCGMSDFCFSN-CNI 111
NN I ++ IP P P+IF + TY ++ + L +++ F + + + C SN +
Sbjct: 147 NNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLD--CLSNLTRV 204
Query: 110 TTSS 99
TT S
Sbjct: 205 TTRS 208
>sp|Q8XCE7|OTSA_ECO57 Alpha,alpha-trehalose-phosphate synthase [UDP-forming]
(Trehalose-6-phosphate synthase)
(UDP-glucose-glucosephosphate glucosyltransferase)
Length = 474
Score = 29.3 bits (64), Expect = 3.7
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -2
Query: 287 NNSIMWYCPIPHPLPDIFISPNTYSSITKYLILRNIIFFASIRKKSCGMSDFCFSN-CNI 111
NN I ++ IP P P+IF + TY ++ + L +++ F + + + C SN +
Sbjct: 147 NNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLD--CLSNLTRV 204
Query: 110 TTSS 99
TT S
Sbjct: 205 TTRS 208
>sp|Q13075|BIR1_HUMAN Baculoviral IAP repeat-containing protein 1 (Neuronal apoptosis
inhibitory protein)
Length = 1403
Score = 28.9 bits (63), Expect = 4.8
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 19/71 (26%)
Frame = -1
Query: 381 QLCEDATFQRTYHHLLLLEQRTVVHK-------------------SLCVLQQQHYVVLPH 259
Q+C A F HLL+L +T +L L Q++ P
Sbjct: 849 QICPQAYFSMVSEHLLVLALKTAYQSNTVAACSPFVLQFLQGRTLTLGALNLQYFFDHPE 908
Query: 258 SPSIARHIHFP 226
S S+ R IHFP
Sbjct: 909 SLSLLRSIHFP 919
>sp|Q03096|EST3_YEAST Telomere replication protein EST3 (Ever shorter telomeres protein
3) [Contains: Telomere replication protein EST3 short
protein]
Length = 181
Score = 28.9 bits (63), Expect = 4.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Frame = -2
Query: 260 IPHPLPDIFISPNTYSSITKYLILRNIIFFASIRKKS----CGMSDFCFS------NCNI 111
+PH P I +P ++ ITK+ + + +ASIR S S C S NC I
Sbjct: 52 LPHMSPTILTNPCHFAKITKFYNVCDYKVYASIRDSSHQILVEFSQECVSNFERTHNCRI 111
Query: 110 TTSS 99
T+ +
Sbjct: 112 TSET 115
>sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178
Length = 615
Score = 28.5 bits (62), Expect = 6.3
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +3
Query: 144 STGFFPYAGKEDNIPQYEVLCDTGVRVWGNEYVWQWMGNGAVPH 275
++ FFP + VLC GV W +W GN PH
Sbjct: 139 ASAFFP-----SPFDEAAVLCMDGVGEWATTSLWSGQGNQLTPH 177
>sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1742.01 in chromosome III
precursor
Length = 1563
Score = 28.5 bits (62), Expect = 6.3
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -3
Query: 355 THISPLTLARATYSGS*ELVC-PPTTALCGTAPFPIHCQTYSFPQTRTPVSQST 197
T +P T+ T SGS C PPTT L T P T +P + T T
Sbjct: 168 TSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGT 221
>sp|P17629|HPR1_YEAST Protein HPR1
Length = 752
Score = 28.1 bits (61), Expect = 8.3
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = -2
Query: 194 ILRNII-------FFASIRKKSCGMSDFCFSNCNITTSSRSYNV*SRICLNSIMRYLSI 39
++RN+I F+ S + +SD F N + R N+ S IC N ++++ I
Sbjct: 408 LIRNLISSDETRNFYKSCYLRENPLSDIDFENLDEVNKKRGLNLCSYICDNRVLKFYKI 466
>sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
Length = 436
Score = 28.1 bits (61), Expect = 8.3
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = -1
Query: 339 LLLLEQRTVVHKSLCVLQQQHYVVLPHSPSIARHIHFPKHVLQYHK 202
LLLLEQ+ + + + + P+ P+++ H++F H+++ +K
Sbjct: 258 LLLLEQQNITKSFIFIQNIIKGINNPYKPNLSWHLNFEWHLIKDYK 303
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,108,356
Number of Sequences: 369166
Number of extensions: 1294125
Number of successful extensions: 3365
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3358
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)