Planaria EST Database

DrC_00322

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00322
         (1047 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35980|RL18_MOUSE  60S ribosomal protein L18                   201   4e-51
sp|P12001|RL18_RAT  60S ribosomal protein L18                     200   5e-51
sp|P69091|RL18_ORENI  60S ribosomal protein L18 >gi|59800182...   199   8e-51
sp|Q90YV0|RL18_ICTPU  60S ribosomal protein L18                   199   8e-51
sp|Q07020|RL18_HUMAN  60S ribosomal protein L18                   199   1e-50
sp|P09897|RL18A_XENLA  60S ribosomal protein L18-A (L14A)         186   1e-46
sp|P02412|RL18B_XENLA  60S ribosomal protein L18B (L14B)          186   1e-46
sp|P42791|RL18_ARATH  60S ribosomal protein L18                   185   2e-46
sp|O65729|RL18_CICAR  60S ribosomal protein L18                   170   7e-42
sp|P07279|RL18_YEAST  60S ribosomal protein L18 (RP28)            144   4e-34

>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
          Length = 188

 Score =  201 bits (510), Expect = 4e-51
 Identities = 100/169 (59%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
 Frame = +3

Query: 459 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
           MG+DI H K R V+R  PKS D Y RL  KL+ +L R+T   FN ++ KRL M+R  R P
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
           LS++R++++MK PGRE+K AVVVGTV DD+RI EVPKL +CALRV++ AR+RILKAGG+I
Sbjct: 61  LSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKI 120

Query: 816 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 962
           +TFD+LAL +P G+GTVLL GPR      ++ G APG PHSHT+P+VRS
Sbjct: 121 LTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169

>sp|P12001|RL18_RAT 60S ribosomal protein L18
          Length = 188

 Score =  200 bits (509), Expect = 5e-51
 Identities = 99/169 (58%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
 Frame = +3

Query: 459 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
           MG+DI H K R V+R  PKS D Y RL  KL+ +L R+T   FN ++ KRL M+R  R P
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
           LS++R++++MK PGRE+K AVVVGT+ DD+RI EVPKL +CALRV++ AR+RILKAGG+I
Sbjct: 61  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKI 120

Query: 816 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 962
           +TFD+LAL +P G+GTVLL GPR      ++ G APG PHSHT+P+VRS
Sbjct: 121 LTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169

>sp|P69091|RL18_ORENI 60S ribosomal protein L18
 sp|P69090|RL18_OREMO 60S ribosomal protein L18
          Length = 188

 Score =  199 bits (507), Expect = 8e-51
 Identities = 97/169 (57%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
 Frame = +3

Query: 459 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
           MG+DI H K R V R  PKS D Y RL  KL+ +L R++   FN ++ +RL M+R  R P
Sbjct: 1   MGVDIRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPP 60

Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
           ++++RL+++MK PGRE+KIAVVVGTV DD+RI+++PKL +CALRVT GAR RILKAGG++
Sbjct: 61  IAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQV 120

Query: 816 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 962
           +TFD+LAL +P G+GTVLL GPR      ++ G APG PHSHT+P+VRS
Sbjct: 121 MTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRS 169

>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
          Length = 188

 Score =  199 bits (507), Expect = 8e-51
 Identities = 97/169 (57%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
 Frame = +3

Query: 459 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
           MG+DI H K R V RT PKS D Y RL  KL+ +L R+++  FN ++ KRL M++  R P
Sbjct: 1   MGVDIRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPP 60

Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
           L+++RL+++MK  GRE+KIAVVVGT+ DD+RI  +PKL +CALRVTAGAR RILKAGG++
Sbjct: 61  LALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQV 120

Query: 816 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 962
           +TFD+LA+ TP G+GTVLL GPR      ++ G APG PHSHT+P++RS
Sbjct: 121 MTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRS 169

>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
          Length = 188

 Score =  199 bits (505), Expect = 1e-50
 Identities = 98/169 (57%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
 Frame = +3

Query: 459 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
           MG+DI H K R V+R  PKS D Y RL  KL+ +L R+T   FN ++ KRL M+R  R P
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
           LS++R++++MK PGRE+K AVVVGT+ DD+R++EVPKL +CALRVT+ AR+RIL+AGG+I
Sbjct: 61  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120

Query: 816 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 962
           +TFD+LAL +P G GTVLL GPR      ++ G APG PHSHT+P+VRS
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169

>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
          Length = 188

 Score =  186 bits (471), Expect = 1e-46
 Identities = 93/169 (55%), Positives = 123/169 (72%), Gaps = 1/169 (0%)
 Frame = +3

Query: 459 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
           MGIDI H K R V+R  PKS D Y RL  KL+ +L R+T   FN ++ KRL M+R  R P
Sbjct: 1   MGIDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 60

Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
           LS++RL+++MK P RE+K AVVVG +  D+RI ++PKLT+CAL++T+GAR+RILKAGG+I
Sbjct: 61  LSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQI 120

Query: 816 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 962
           +TFD+LAL  P G+ TVLL GPR      ++ G AP  PHS T+P+V S
Sbjct: 121 MTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLS 169

>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
          Length = 188

 Score =  186 bits (471), Expect = 1e-46
 Identities = 92/169 (54%), Positives = 123/169 (72%), Gaps = 1/169 (0%)
 Frame = +3

Query: 459 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
           MGIDI H K R V+R  PKS D Y RL  KL+ +L R+T   FN ++ KRL M+R  R P
Sbjct: 1   MGIDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 60

Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
           LS++RL+++MK  GRE+K AVVVG + DD+RI ++PKL +CAL++T+G R+RILK+GG+I
Sbjct: 61  LSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQI 120

Query: 816 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 962
           +TFD+LAL  P G+ TVLL GPR      ++ G APG PHS T+P+V S
Sbjct: 121 MTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLS 169

>sp|P42791|RL18_ARATH 60S ribosomal protein L18
          Length = 187

 Score =  185 bits (470), Expect = 2e-46
 Identities = 93/170 (54%), Positives = 129/170 (75%), Gaps = 2/170 (1%)
 Frame = +3

Query: 459 MGIDI--SHKTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQ 632
           MGID+    K++  KRT PKS+D Y +L+ KL+ +L R+T  KFNG+I KRL M++  + 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 633 PLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGE 812
           PLS++RL++ M   G+EDKIAV+VGT+ DDLR+ E+P + + ALR T  ARARI KAGGE
Sbjct: 61  PLSLSRLVEFMT--GKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGE 118

Query: 813 IITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 962
            +TFD+LALR PLG+ TVLL+GP++   + K+ G APGVPHSH++P+VR+
Sbjct: 119 CLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRA 168

>sp|O65729|RL18_CICAR 60S ribosomal protein L18
          Length = 183

 Score =  170 bits (430), Expect = 7e-42
 Identities = 88/161 (54%), Positives = 118/161 (73%)
 Frame = +3

Query: 480 KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMK 659
           K +  KRT+PKSND Y +L  KL+ +L R+T+  FN +I KRL M++  R PLS++RL+K
Sbjct: 7   KNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIK 66

Query: 660 QMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELAL 839
            M+  G+E KI VVVG V DD+R+ +VP + + AL+ T  ARARI KAGGE +TFD+LAL
Sbjct: 67  YMQ--GKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLAL 124

Query: 840 RTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 962
           R PL   TVLL+GP++   + K+ G APGVPHSHT+P+VRS
Sbjct: 125 RLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS 164

>sp|P07279|RL18_YEAST 60S ribosomal protein L18 (RP28)
          Length = 186

 Score =  144 bits (363), Expect = 4e-34
 Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 2/170 (1%)
 Frame = +3

Query: 459 MGIDISHKT--RIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQ 632
           MGID + K   R   RT PKS++ Y +L  KL+++L R+T+  FN ++ K L +++  R 
Sbjct: 1   MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRP 60

Query: 633 PLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGE 812
           P+S++R+ + +K+ G  +K  VVVGTV DD RI E PK T+ ALR TAGARA+I+KAGGE
Sbjct: 61  PVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGE 120

Query: 813 IITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 962
            IT D+LA+R P G+ T++L+GPR+   + ++ G     PH    P + S
Sbjct: 121 CITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILS 167

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,656,086
Number of Sequences: 369166
Number of extensions: 2151906
Number of successful extensions: 5154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5140
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 11340306615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00322

  1. Dr_sW_028_B15
  2. Dr_sW_008_I21
  3. Dr_sW_022_D06
  4. Dr_sW_003_M05
  5. Dr_sW_021_F22
  6. Dr_sW_009_K15
  7. Dr_sW_014_M15
  8. Dr_sW_004_D04
  9. Dr_sW_014_H23
  10. Dr_sW_020_P05
  11. Dr_sW_006_L08
  12. Dr_sW_012_I20
  13. Dr_sW_019_O16
  14. Dr_sW_005_E09
  15. Dr_sW_020_J24
  16. Dr_sW_026_L24
  17. Dr_sW_015_D22
  18. Dr_sW_020_F11
  19. Dr_sW_006_C15
  20. Dr_sW_019_N10
  21. Dr_sW_002_A10