Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_L08
(581 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35980|RL18_MOUSE 60S ribosomal protein L18 196 5e-50
sp|P12001|RL18_RAT 60S ribosomal protein L18 195 6e-50
sp|P69091|RL18_ORENI 60S ribosomal protein L18 >gi|59800182... 194 1e-49
sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 194 2e-49
sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 192 4e-49
sp|P42791|RL18_ARATH 60S ribosomal protein L18 181 2e-45
sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A) 180 2e-45
sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B) 180 2e-45
sp|O65729|RL18_CICAR 60S ribosomal protein L18 168 8e-42
sp|P07279|RL18_YEAST 60S ribosomal protein L18 (RP28) 140 3e-33
>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
Length = 188
Score = 196 bits (497), Expect = 5e-50
Identities = 98/166 (59%), Positives = 126/166 (75%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 DISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSI 178
DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R PLS+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSL 63
Query: 179 ARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITF 358
+R++++MK PGRE+K AVVVGTV DD+RI EVPKL +CALRV++ AR+RILKAGG+I+TF
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTF 123
Query: 359 DELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 496
D+LAL +P G+GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 124 DQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P12001|RL18_RAT 60S ribosomal protein L18
Length = 188
Score = 195 bits (496), Expect = 6e-50
Identities = 97/166 (58%), Positives = 126/166 (75%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 DISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSI 178
DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R PLS+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSL 63
Query: 179 ARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITF 358
+R++++MK PGRE+K AVVVGT+ DD+RI EVPKL +CALRV++ AR+RILKAGG+I+TF
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTF 123
Query: 359 DELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 496
D+LAL +P G+GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 124 DQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P69091|RL18_ORENI 60S ribosomal protein L18
sp|P69090|RL18_OREMO 60S ribosomal protein L18
Length = 188
Score = 194 bits (494), Expect = 1e-49
Identities = 95/166 (57%), Positives = 126/166 (75%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 DISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSI 178
DI H K R V R PKS D Y RL KL+ +L R++ FN ++ +RL M+R R P+++
Sbjct: 4 DIRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAV 63
Query: 179 ARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITF 358
+RL+++MK PGRE+KIAVVVGTV DD+RI+++PKL +CALRVT GAR RILKAGG+++TF
Sbjct: 64 SRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTF 123
Query: 359 DELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 496
D+LAL +P G+GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 124 DQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
Length = 188
Score = 194 bits (492), Expect = 2e-49
Identities = 96/166 (57%), Positives = 126/166 (75%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 DISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSI 178
DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R PLS+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSL 63
Query: 179 ARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITF 358
+R++++MK PGRE+K AVVVGT+ DD+R++EVPKL +CALRVT+ AR+RIL+AGG+I+TF
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTF 123
Query: 359 DELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 496
D+LAL +P G GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 124 DQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
Length = 188
Score = 192 bits (489), Expect = 4e-49
Identities = 94/166 (56%), Positives = 126/166 (75%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 DISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSI 178
DI H K R V R+ PKS D Y RL KL+ +L R+++ FN ++ KRL M++ R PL++
Sbjct: 4 DIRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLAL 63
Query: 179 ARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITF 358
+RL+++MK GRE+KIAVVVGT+ DD+RI +PKL +CALRVTAGAR RILKAGG+++TF
Sbjct: 64 SRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTF 123
Query: 359 DELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 496
D+LA+ TP G+GTVLL GPR ++ G APG PHSHT+P++RS
Sbjct: 124 DQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRS 169
>sp|P42791|RL18_ARATH 60S ribosomal protein L18
Length = 187
Score = 181 bits (458), Expect = 2e-45
Identities = 88/161 (54%), Positives = 124/161 (77%)
Frame = +2
Query: 14 KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMK 193
K++ KR+ PKS+D Y +L+ KL+ +L R+T KFNG+I KRL M++ + PLS++RL++
Sbjct: 10 KSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVE 69
Query: 194 QMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELAL 373
M G+EDKIAV+VGT+ DDLR+ E+P + + ALR T ARARI KAGGE +TFD+LAL
Sbjct: 70 FMT--GKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLAL 127
Query: 374 RTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 496
R PLG+ TVLL+GP++ + K+ G APGVPHSH++P+VR+
Sbjct: 128 RAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRA 168
>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
Length = 188
Score = 180 bits (457), Expect = 2e-45
Identities = 90/166 (54%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 DISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSI 178
DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R PLS+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSM 63
Query: 179 ARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITF 358
+RL+++MK P RE+K AVVVG + D+RI ++PKLT+CAL++T+GAR+RILKAGG+I+TF
Sbjct: 64 SRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTF 123
Query: 359 DELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 496
D+LAL P G+ TVLL GPR ++ G AP PHS T+P+V S
Sbjct: 124 DQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLS 169
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
Length = 188
Score = 180 bits (457), Expect = 2e-45
Identities = 89/166 (53%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 DISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSI 178
DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R PLS+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSM 63
Query: 179 ARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITF 358
+RL+++MK GRE+K AVVVG + DD+RI ++PKL +CAL++T+G R+RILK+GG+I+TF
Sbjct: 64 SRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTF 123
Query: 359 DELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 496
D+LAL P G+ TVLL GPR ++ G APG PHS T+P+V S
Sbjct: 124 DQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLS 169
>sp|O65729|RL18_CICAR 60S ribosomal protein L18
Length = 183
Score = 168 bits (426), Expect = 8e-42
Identities = 87/161 (54%), Positives = 118/161 (73%)
Frame = +2
Query: 14 KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMK 193
K + KR++PKSND Y +L KL+ +L R+T+ FN +I KRL M++ R PLS++RL+K
Sbjct: 7 KNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIK 66
Query: 194 QMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELAL 373
M+ G+E KI VVVG V DD+R+ +VP + + AL+ T ARARI KAGGE +TFD+LAL
Sbjct: 67 YMQ--GKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLAL 124
Query: 374 RTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 496
R PL TVLL+GP++ + K+ G APGVPHSHT+P+VRS
Sbjct: 125 RLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS 164
>sp|P07279|RL18_YEAST 60S ribosomal protein L18 (RP28)
Length = 186
Score = 140 bits (352), Expect = 3e-33
Identities = 73/168 (43%), Positives = 110/168 (65%), Gaps = 4/168 (2%)
Frame = +2
Query: 5 ISHKTRIVKRS----TPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPL 172
I H ++ KRS PKS++ Y +L KL+++L R+T+ FN ++ K L +++ R P+
Sbjct: 3 IDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPV 62
Query: 173 SIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEII 352
S++R+ + +K+ G +K VVVGTV DD RI E PK T+ ALR TAGARA+I+KAGGE I
Sbjct: 63 SVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECI 122
Query: 353 TFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 496
T D+LA+R P G+ T++L+GPR+ + ++ G PH P + S
Sbjct: 123 TLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILS 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,741,461
Number of Sequences: 369166
Number of extensions: 1014870
Number of successful extensions: 2669
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2656
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)