Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_F22
(319 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P69091|RL18_ORENI 60S ribosomal protein L18 >gi|59800182... 108 4e-24
sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 108 4e-24
sp|P35980|RL18_MOUSE 60S ribosomal protein L18 106 1e-23
sp|P12001|RL18_RAT 60S ribosomal protein L18 106 1e-23
sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 105 4e-23
sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A) 99 2e-21
sp|P42791|RL18_ARATH 60S ribosomal protein L18 99 3e-21
sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B) 97 1e-20
sp|O65729|RL18_CICAR 60S ribosomal protein L18 91 1e-18
sp|P50885|RL18_TRYBB 60S ribosomal protein L18 81 6e-16
>sp|P69091|RL18_ORENI 60S ribosomal protein L18
sp|P69090|RL18_OREMO 60S ribosomal protein L18
Length = 188
Score = 108 bits (270), Expect = 4e-24
Identities = 49/78 (62%), Positives = 63/78 (80%)
Frame = +1
Query: 1 IREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKY 180
I+++PKL +CALRVT GAR RILKAGG+++TFD+LAL +P G+GTVLL GPR ++
Sbjct: 92 IQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRH 151
Query: 181 MGAAPGVPHSHTRPHVRS 234
G APG PHSHT+P+VRS
Sbjct: 152 FGKAPGTPHSHTKPYVRS 169
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
Length = 188
Score = 108 bits (270), Expect = 4e-24
Identities = 49/78 (62%), Positives = 62/78 (79%)
Frame = +1
Query: 1 IREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKY 180
I +PKL +CALRVTAGAR RILKAGG+++TFD+LA+ TP G+GTVLL GPR ++
Sbjct: 92 ILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSGPRKAREVYRH 151
Query: 181 MGAAPGVPHSHTRPHVRS 234
G APG PHSHT+P++RS
Sbjct: 152 FGKAPGTPHSHTKPYIRS 169
>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
Length = 188
Score = 106 bits (265), Expect = 1e-23
Identities = 50/78 (64%), Positives = 63/78 (80%)
Frame = +1
Query: 1 IREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKY 180
I EVPKL +CALRV++ AR+RILKAGG+I+TFD+LAL +P G+GTVLL GPR ++
Sbjct: 92 ILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRH 151
Query: 181 MGAAPGVPHSHTRPHVRS 234
G APG PHSHT+P+VRS
Sbjct: 152 FGKAPGTPHSHTKPYVRS 169
>sp|P12001|RL18_RAT 60S ribosomal protein L18
Length = 188
Score = 106 bits (265), Expect = 1e-23
Identities = 50/78 (64%), Positives = 63/78 (80%)
Frame = +1
Query: 1 IREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKY 180
I EVPKL +CALRV++ AR+RILKAGG+I+TFD+LAL +P G+GTVLL GPR ++
Sbjct: 92 ILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRH 151
Query: 181 MGAAPGVPHSHTRPHVRS 234
G APG PHSHT+P+VRS
Sbjct: 152 FGKAPGTPHSHTKPYVRS 169
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
Length = 188
Score = 105 bits (261), Expect = 4e-23
Identities = 49/78 (62%), Positives = 63/78 (80%)
Frame = +1
Query: 1 IREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKY 180
++EVPKL +CALRVT+ AR+RIL+AGG+I+TFD+LAL +P G GTVLL GPR ++
Sbjct: 92 VQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRH 151
Query: 181 MGAAPGVPHSHTRPHVRS 234
G APG PHSHT+P+VRS
Sbjct: 152 FGKAPGTPHSHTKPYVRS 169
>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
Length = 188
Score = 99.4 bits (246), Expect = 2e-21
Identities = 45/78 (57%), Positives = 60/78 (76%)
Frame = +1
Query: 1 IREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKY 180
I ++PKLT+CAL++T+GAR+RILKAGG+I+TFD+LAL P G+ TVLL GPR ++
Sbjct: 92 IHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRH 151
Query: 181 MGAAPGVPHSHTRPHVRS 234
G AP PHS T+P+V S
Sbjct: 152 FGKAPSTPHSRTKPYVLS 169
>sp|P42791|RL18_ARATH 60S ribosomal protein L18
Length = 187
Score = 99.0 bits (245), Expect = 3e-21
Identities = 45/78 (57%), Positives = 61/78 (78%)
Frame = +1
Query: 1 IREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKY 180
+ E+P + + ALR T ARARI KAGGE +TFD+LALR PLG+ TVLL+GP++ + K+
Sbjct: 91 VHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKH 150
Query: 181 MGAAPGVPHSHTRPHVRS 234
G APGVPHSH++P+VR+
Sbjct: 151 FGPAPGVPHSHSKPYVRA 168
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
Length = 188
Score = 96.7 bits (239), Expect = 1e-20
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = +1
Query: 1 IREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKY 180
I ++PKL +CAL++T+G R+RILK+GG+I+TFD+LAL P G+ TVLL GPR ++
Sbjct: 92 IHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRH 151
Query: 181 MGAAPGVPHSHTRPHVRS 234
G APG PHS T+P+V S
Sbjct: 152 FGKAPGTPHSRTKPYVLS 169
>sp|O65729|RL18_CICAR 60S ribosomal protein L18
Length = 183
Score = 90.5 bits (223), Expect = 1e-18
Identities = 45/78 (57%), Positives = 59/78 (75%)
Frame = +1
Query: 1 IREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKY 180
+ +VP + + AL+ T ARARI KAGGE +TFD+LALR PL TVLL+GP++ + K+
Sbjct: 88 VYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKH 146
Query: 181 MGAAPGVPHSHTRPHVRS 234
G APGVPHSHT+P+VRS
Sbjct: 147 FGPAPGVPHSHTKPYVRS 164
>sp|P50885|RL18_TRYBB 60S ribosomal protein L18
Length = 193
Score = 81.3 bits (199), Expect = 6e-16
Identities = 41/75 (54%), Positives = 52/75 (69%)
Frame = +1
Query: 10 VPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGA 189
+P L +CALR + AR RI AGGE +TFD+LA+ P GK T+LL+G +S S K+ GA
Sbjct: 102 IPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFGA 161
Query: 190 APGVPHSHTRPHVRS 234
A GVP SH +PHV S
Sbjct: 162 A-GVPGSHAKPHVSS 175
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,264,907
Number of Sequences: 369166
Number of extensions: 559098
Number of successful extensions: 1512
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)