Planarian EST Database


Dr_sW_020_F11

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_020_F11
         (588 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35980|RL18_MOUSE  60S ribosomal protein L18                   199   4e-51
sp|P12001|RL18_RAT  60S ribosomal protein L18                     199   6e-51
sp|P69091|RL18_ORENI  60S ribosomal protein L18 >gi|59800182...   198   9e-51
sp|Q07020|RL18_HUMAN  60S ribosomal protein L18                   197   2e-50
sp|Q90YV0|RL18_ICTPU  60S ribosomal protein L18                   196   4e-50
sp|P09897|RL18A_XENLA  60S ribosomal protein L18-A (L14A)         184   1e-46
sp|P02412|RL18B_XENLA  60S ribosomal protein L18B (L14B)          184   1e-46
sp|P42791|RL18_ARATH  60S ribosomal protein L18                   182   7e-46
sp|O65729|RL18_CICAR  60S ribosomal protein L18                   168   8e-42
sp|P07279|RL18_YEAST  60S ribosomal protein L18 (RP28)            140   2e-33
>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
          Length = 188

 Score =  199 bits (506), Expect = 4e-51
 Identities = 99/168 (58%), Positives = 128/168 (76%), Gaps = 1/168 (0%)
 Frame = +3

Query: 3   GIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPL 179
           G+DI H K R V+R  PKS D Y RL  KL+ +L R+T   FN ++ KRL M+R  R PL
Sbjct: 2   GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query: 180 SIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEII 359
           S++R++++MK PGRE+K AVVVGTV DD+RI EVPKL +CALRV++ AR+RILKAGG+I+
Sbjct: 62  SLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKIL 121

Query: 360 TFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 503
           TFD+LAL +P G+GTVLL GPR      ++ G APG PHSHT+P+VRS
Sbjct: 122 TFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P12001|RL18_RAT 60S ribosomal protein L18
          Length = 188

 Score =  199 bits (505), Expect = 6e-51
 Identities = 98/168 (58%), Positives = 128/168 (76%), Gaps = 1/168 (0%)
 Frame = +3

Query: 3   GIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPL 179
           G+DI H K R V+R  PKS D Y RL  KL+ +L R+T   FN ++ KRL M+R  R PL
Sbjct: 2   GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query: 180 SIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEII 359
           S++R++++MK PGRE+K AVVVGT+ DD+RI EVPKL +CALRV++ AR+RILKAGG+I+
Sbjct: 62  SLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKIL 121

Query: 360 TFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 503
           TFD+LAL +P G+GTVLL GPR      ++ G APG PHSHT+P+VRS
Sbjct: 122 TFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P69091|RL18_ORENI 60S ribosomal protein L18
 sp|P69090|RL18_OREMO 60S ribosomal protein L18
          Length = 188

 Score =  198 bits (503), Expect = 9e-51
 Identities = 96/168 (57%), Positives = 128/168 (76%), Gaps = 1/168 (0%)
 Frame = +3

Query: 3   GIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPL 179
           G+DI H K R V R  PKS D Y RL  KL+ +L R++   FN ++ +RL M+R  R P+
Sbjct: 2   GVDIRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPI 61

Query: 180 SIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEII 359
           +++RL+++MK PGRE+KIAVVVGTV DD+RI+++PKL +CALRVT GAR RILKAGG+++
Sbjct: 62  AVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVM 121

Query: 360 TFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 503
           TFD+LAL +P G+GTVLL GPR      ++ G APG PHSHT+P+VRS
Sbjct: 122 TFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
          Length = 188

 Score =  197 bits (501), Expect = 2e-50
 Identities = 97/168 (57%), Positives = 128/168 (76%), Gaps = 1/168 (0%)
 Frame = +3

Query: 3   GIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPL 179
           G+DI H K R V+R  PKS D Y RL  KL+ +L R+T   FN ++ KRL M+R  R PL
Sbjct: 2   GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query: 180 SIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEII 359
           S++R++++MK PGRE+K AVVVGT+ DD+R++EVPKL +CALRVT+ AR+RIL+AGG+I+
Sbjct: 62  SLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKIL 121

Query: 360 TFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 503
           TFD+LAL +P G GTVLL GPR      ++ G APG PHSHT+P+VRS
Sbjct: 122 TFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
          Length = 188

 Score =  196 bits (498), Expect = 4e-50
 Identities = 95/168 (56%), Positives = 128/168 (76%), Gaps = 1/168 (0%)
 Frame = +3

Query: 3   GIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPL 179
           G+DI H K R V R+ PKS D Y RL  KL+ +L R+++  FN ++ KRL M++  R PL
Sbjct: 2   GVDIRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPL 61

Query: 180 SIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEII 359
           +++RL+++MK  GRE+KIAVVVGT+ DD+RI  +PKL +CALRVTAGAR RILKAGG+++
Sbjct: 62  ALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVM 121

Query: 360 TFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 503
           TFD+LA+ TP G+GTVLL GPR      ++ G APG PHSHT+P++RS
Sbjct: 122 TFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRS 169
>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
          Length = 188

 Score =  184 bits (467), Expect = 1e-46
 Identities = 92/168 (54%), Positives = 122/168 (72%), Gaps = 1/168 (0%)
 Frame = +3

Query: 3   GIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPL 179
           GIDI H K R V+R  PKS D Y RL  KL+ +L R+T   FN ++ KRL M+R  R PL
Sbjct: 2   GIDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPL 61

Query: 180 SIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEII 359
           S++RL+++MK P RE+K AVVVG +  D+RI ++PKLT+CAL++T+GAR+RILKAGG+I+
Sbjct: 62  SMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIM 121

Query: 360 TFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 503
           TFD+LAL  P G+ TVLL GPR      ++ G AP  PHS T+P+V S
Sbjct: 122 TFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLS 169
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
          Length = 188

 Score =  184 bits (467), Expect = 1e-46
 Identities = 91/168 (54%), Positives = 122/168 (72%), Gaps = 1/168 (0%)
 Frame = +3

Query: 3   GIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPL 179
           GIDI H K R V+R  PKS D Y RL  KL+ +L R+T   FN ++ KRL M+R  R PL
Sbjct: 2   GIDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPL 61

Query: 180 SIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEII 359
           S++RL+++MK  GRE+K AVVVG + DD+RI ++PKL +CAL++T+G R+RILK+GG+I+
Sbjct: 62  SMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIM 121

Query: 360 TFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 503
           TFD+LAL  P G+ TVLL GPR      ++ G APG PHS T+P+V S
Sbjct: 122 TFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLS 169
>sp|P42791|RL18_ARATH 60S ribosomal protein L18
          Length = 187

 Score =  182 bits (461), Expect = 7e-46
 Identities = 91/169 (53%), Positives = 128/169 (75%), Gaps = 2/169 (1%)
 Frame = +3

Query: 3   GIDI--SHKTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 176
           GID+    K++  KR+ PKS+D Y +L+ KL+ +L R+T  KFNG+I KRL M++  + P
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAP 61

Query: 177 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 356
           LS++RL++ M   G+EDKIAV+VGT+ DDLR+ E+P + + ALR T  ARARI KAGGE 
Sbjct: 62  LSLSRLVEFMT--GKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGEC 119

Query: 357 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 503
           +TFD+LALR PLG+ TVLL+GP++   + K+ G APGVPHSH++P+VR+
Sbjct: 120 LTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRA 168
>sp|O65729|RL18_CICAR 60S ribosomal protein L18
          Length = 183

 Score =  168 bits (426), Expect = 8e-42
 Identities = 87/161 (54%), Positives = 118/161 (73%)
 Frame = +3

Query: 21  KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMK 200
           K +  KR++PKSND Y +L  KL+ +L R+T+  FN +I KRL M++  R PLS++RL+K
Sbjct: 7   KNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIK 66

Query: 201 QMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELAL 380
            M+  G+E KI VVVG V DD+R+ +VP + + AL+ T  ARARI KAGGE +TFD+LAL
Sbjct: 67  YMQ--GKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLAL 124

Query: 381 RTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 503
           R PL   TVLL+GP++   + K+ G APGVPHSHT+P+VRS
Sbjct: 125 RLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS 164
>sp|P07279|RL18_YEAST 60S ribosomal protein L18 (RP28)
          Length = 186

 Score =  140 bits (354), Expect = 2e-33
 Identities = 74/169 (43%), Positives = 111/169 (65%), Gaps = 2/169 (1%)
 Frame = +3

Query: 3   GIDISHKT--RIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 176
           GID + K   R   R+ PKS++ Y +L  KL+++L R+T+  FN ++ K L +++  R P
Sbjct: 2   GIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPP 61

Query: 177 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 356
           +S++R+ + +K+ G  +K  VVVGTV DD RI E PK T+ ALR TAGARA+I+KAGGE 
Sbjct: 62  VSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGEC 121

Query: 357 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 503
           IT D+LA+R P G+ T++L+GPR+   + ++ G     PH    P + S
Sbjct: 122 ITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILS 167
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,668,576
Number of Sequences: 369166
Number of extensions: 1038568
Number of successful extensions: 2725
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2712
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)